View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_39 (Length: 227)
Name: NF17896_low_39
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_39 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 48877061 - 48877281
Alignment:
| Q |
7 |
agtaaacccttcttaatttgttactttgcaactatcttcactacaacctgcatgaccaagcagagaagtttggctacactatttgaagcttattcaaacc |
106 |
Q |
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| T |
48877061 |
agtaaacccttcttaatttgttactttgcaactatcttcactacaacctgtatgaccaagcagagaagtttggctccactatttgaagcttattcaaacc |
48877160 |
T |
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| Q |
107 |
agttcagtccttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactct |
206 |
Q |
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| T |
48877161 |
agttcagtccttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactct |
48877260 |
T |
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| Q |
207 |
agtgcaactcagggttttcga |
227 |
Q |
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| T |
48877261 |
agtgcaactcagggttttcga |
48877281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 8380756 - 8380677
Alignment:
| Q |
122 |
tcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaa |
201 |
Q |
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| T |
8380756 |
tcttctacctcgggaaaattcggaccattcagttggagtataccgatgcaaaagagtctctcctgcaggctgctcgtaaa |
8380677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 8381008 - 8380942
Alignment:
| Q |
10 |
aaacccttcttaatttgttactttgcaactatcttcactacaacctgcatgaccaagcagagaagtt |
76 |
Q |
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| T |
8381008 |
aaacacttcttaatttgttacttcgtaactacctccactacaacctatatgatcaggcagagaagtt |
8380942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 53456475 - 53456409
Alignment:
| Q |
10 |
aaacccttcttaatttgttactttgcaactatcttcactacaacctgcatgaccaagcagagaagtt |
76 |
Q |
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| T |
53456475 |
aaacccttcttaatttgctgcttcgcaactatcttcactacaacctatatgaccaggcagagaagtt |
53456409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 53456132 - 53456021
Alignment:
| Q |
117 |
ttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaact |
215 |
Q |
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| T |
53456132 |
ttatctcttctacctcgggaaaatccggactattcaattggagtatacagatgcaaaagagtctctcctgcaagctgctcgtaaagctccagttgcagct |
53456033 |
T |
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| Q |
216 |
cagggttttcga |
227 |
Q |
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| T |
53456032 |
cggggttttcga |
53456021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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