View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17896_low_4 (Length: 569)
Name: NF17896_low_4
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 552
Target Start/End: Complemental strand, 28953450 - 28952910
Alignment:
| Q |
8 |
gtttttgagcatgttgtcaattttggaatattggtgtcatatttttcaggatttctagttcaagcacaaaatcatcagtgacagagaatgaaaatgatca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28953450 |
gtttttgagcatgttgtcaattttggaatattggtgtcatgtttttcaggatttctagttcaagcacaaaatcatcagtgacagagaatgaaaatgatca |
28953351 |
T |
|
| Q |
108 |
tgcagattcctttgataattctttggcattaattcccgtgactgtgaatgtgacagcaacatctcaagctaccacaactaatcacaaacaagtcaatgaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28953350 |
tgcagattcctttgataattctttggcattagttcctgtgactgtgaatgtgacagcaacatctcaagctaccacaactaatcacaaacaagtcaatgaa |
28953251 |
T |
|
| Q |
208 |
agtgtctttgaagctctagatgcattgaaggttgccaaggaaaagcttcaaagttccttaggaataaggcaaatgattcgcgtcggcctaatgtaacttc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28953250 |
agtgtctttgaagctctagatgcattgaaggttgccaaggaaaagcttcaaagttccttaggaataaggcaaatgattcgcgtcggcctaatgtaacttc |
28953151 |
T |
|
| Q |
308 |
tcactccgagatagtaatgattgcatatttggattgacagtgagtttgacaaaattacagtggcactacatgattttgctaaattcacggccggtccaaa |
407 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28953150 |
tcactccgaaatagtaatgattgcatatttggattgacagtgagtttgataaaattacagtggcacaacatgattttgctaaattcacggccggtccaaa |
28953051 |
T |
|
| Q |
408 |
tatggactaaggctaaattatttgatatttctatgttaatgcattataggaaatgagattattcagcatgtagatagagataggtgagaacaacaataac |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28953050 |
tatggactaaggctaaattatttgatatttctatgttaatgcattataggaaatgagattattcagcatgtagat----ataggtgagaacaacaataac |
28952955 |
T |
|
| Q |
508 |
cttgaataatgctaaagttcttgtgaattgtggtttttcacttac |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28952954 |
cttgaataatgctaaagttcttgtgaattgtggtttttcacttac |
28952910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University