View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_5 (Length: 539)
Name: NF17896_low_5
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 529
Target Start/End: Complemental strand, 7906798 - 7906287
Alignment:
| Q |
19 |
attcatgaggtgccttatgtctcagctgatgatttt-gaggaaggtcagatttcagctccagaaaataatgatattgcacatcacactgcacctcaggct |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7906798 |
attcatgaggtgccttatgtctcagctgatgatttttgaggaaggtcagatttcagctcctgaaaataatgatattgcacatcacactgcacctcaggct |
7906699 |
T |
|
| Q |
118 |
catgtcccagatcagagtaattcagctaagttgacacttcacaattcctttgaactgcttgaaggtggtaccgagcatgttataggggatgctaagacaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
7906698 |
catgtcccagatcagagtaattcagctaagttgacacttcacaattcctttgaactgcttgaaggtggtactgagcatgttatagggtatgctaagacaa |
7906599 |
T |
|
| Q |
218 |
gtgatgaagaatcgatccccattttactggatatgtacattgataaaaatccaaatgtggaagataattcactaaggaaggaggatttgaatcacaacac |
317 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7906598 |
gtgatgaagaatcgatccccattttactggatatgcacagtgataaaaatccaaatgtggaagataattcactaaggaaggaggacttgaatcacaacac |
7906499 |
T |
|
| Q |
318 |
aaacttagatagtactggtaacttggtaaaaaggaactctaactttgttgctttgagttcaagtaaccctctattgggcccggtcaatgggaagaaggca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7906498 |
aaacttagatagtactggtaacttggtaaaaaggaactctaactttgttgctttgagttcaagtaaccctctattgggcccggtcaatgggaagaaggca |
7906399 |
T |
|
| Q |
418 |
tccctcattacaggtccctcttccttagctcagggtagcactcttgggaggtcattccccactgctactactgagtctcttgttgtagctgcaaacccct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| |
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| T |
7906398 |
tccctcattacaggtccctcttccttagctcagggtagcactcttgggaggtcattccccactgctactattgagtctcttgtagtaactgcaaacccct |
7906299 |
T |
|
| Q |
518 |
tttttgatgatg |
529 |
Q |
| |
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|||||||||||| |
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| T |
7906298 |
tttttgatgatg |
7906287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 148 - 455
Target Start/End: Complemental strand, 6632027 - 6631720
Alignment:
| Q |
148 |
ttgacacttcacaattcctttgaactgcttgaaggtggtaccgagcatgttataggggatgctaagacaagtgatgaagaatcgatccccattttactgg |
247 |
Q |
| |
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||||||||||| ||||| |||||| |||||||| || | | ||||| ||||||||||||||||| | |||||||||||||| | ||||||| || ||| |
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| T |
6632027 |
ttgacacttcaaaattcttttgaattgcttgaaaatgatgctgagcaggttataggggatgctaaaatcagtgatgaagaatctaaccccattctattgg |
6631928 |
T |
|
| Q |
248 |
atatgtacattgataaaaatccaaatgtggaagataattcactaaggaaggaggatttgaatcacaacacaaacttagatagtactggtaacttggtaaa |
347 |
Q |
| |
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||||||||||||| ||||||| ||||| || ||| |||| ||||||||||||||| || | ||| ||||||| |||||| |||||||||||| || ||| |
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| T |
6631927 |
atatgtacattgacaaaaatcaaaatggggcagagaatttactaaggaaggaggaatttactcataacacaatcttagagagtactggtaacatgacaaa |
6631828 |
T |
|
| Q |
348 |
aaggaactctaactttgttgctttgagttcaagtaaccctctattgggcccggtcaatgggaagaaggcatccctcattacaggtccctcttccttagct |
447 |
Q |
| |
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| ||| |||||| |||||| ||||||| || |||||||| | ||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6631827 |
tatgaaatctaaccttgttgatttgagtacatgtaacccttttttgggtcctgttaatgggaagaaggcatccctcattacaggtccctcttccttagct |
6631728 |
T |
|
| Q |
448 |
cagggtag |
455 |
Q |
| |
|
||||||| |
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|
| T |
6631727 |
tagggtag |
6631720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 151 - 455
Target Start/End: Original strand, 31319570 - 31319871
Alignment:
| Q |
151 |
acacttcacaattcctttgaactgcttgaaggtggtaccgagcatgttataggggatgctaagacaagtgatgaagaatcgatccccattttactggata |
250 |
Q |
| |
|
||||||||||| || |||||| |||||||| ||||| | ||||||| |||||||| |||||| ||| |||||| ||||| || ||||| |||||||||| |
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| T |
31319570 |
acacttcacaactcatttgaattgcttgaaagtggttctaagcatgtcataggggaggctaagccaaatgatgaggaatctattcccatattactggata |
31319669 |
T |
|
| Q |
251 |
tgtacattgataaaaatccaaatgtggaagataattcactaaggaaggaggatttgaatcacaacacaaacttagatagtactggtaacttggtaaaaag |
350 |
Q |
| |
|
|| | |||||||||||||||| ||||||||| ||||| ||| |||||||| | |||| ||| |||||||||||||| | | ||||||| ||||||||||| |
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|
| T |
31319670 |
tgcaaattgataaaaatccaattgtggaagacaattccctagggaaggagaaattgactcataacacaaacttagagaatcctggtaatttggtaaaaag |
31319769 |
T |
|
| Q |
351 |
gaactctaactttgttgctttgagttcaagtaaccctctattgggcccggtcaatgggaagaaggcatccctcattacaggtccctcttccttagctcag |
450 |
Q |
| |
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||||||||| ||| |||||||||| || || ||||| |||||||| || ||||||| | | | | || ||||||| ||||||||||| |||||||| |
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| T |
31319770 |
gaactctaaaattgctgctttgagtcca---aatcctcttttgggccctgttaatgggaggcaatctttccccattacaagtccctcttccctagctcag |
31319866 |
T |
|
| Q |
451 |
ggtag |
455 |
Q |
| |
|
|||| |
|
|
| T |
31319867 |
agtag |
31319871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 36769630 - 36769716
Alignment:
| Q |
192 |
gcatgttataggggatgctaagacaagtgatgaagaatcgatccccattttactggatatgtacattgataaaaatccaaatgtgga |
278 |
Q |
| |
|
|||||| |||||||| |||||| |||| ||||| ||||| | |||||| || |||||||| | || |||||||||||||||||||| |
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| T |
36769630 |
gcatgtcataggggaggctaagccaagagatgaggaatccaatcccattatattggatatgcaaatggataaaaatccaaatgtgga |
36769716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 25863330 - 25863294
Alignment:
| Q |
145 |
aagttgacacttcacaattcctttgaactgcttgaag |
181 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||| |
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| T |
25863330 |
aagttgacacttcagaattcctttgagctgcttgaag |
25863294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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