View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_6 (Length: 529)
Name: NF17896_low_6
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_6 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Original strand, 23149152 - 23149652
Alignment:
| Q |
19 |
atgtctcgcctccagcaccaaaaatgtcctgaacaataaggatacatacagagatagttaaaagagaacctgcagagacaccattcaatgctacaagaac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23149152 |
atgtctcgcctccagcaccaaaaatgtcctgaacaataaggatgcatacagagatagttaaaagagaacctgcagagacaccattcaatgctacaagaac |
23149251 |
T |
|
| Q |
119 |
tatgtagaatttaaatgaataaaagtaataaaaacttgttcactattctagactgacaaataatttgagaaagaaatatatttccttgaggaaacttaat |
218 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23149252 |
tacgtagaatttaaatgaataaaagtaataaaaacttgttcactattctagactgacaaataatttgagaaagaaatatatttccttgaggaaacttaat |
23149351 |
T |
|
| Q |
219 |
atgacacattggaagtatttcacagtttaaagatctcatatgtgagataaattaattcaagggcatcttctaaataaccatttaaattctactgtattaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23149352 |
atgacacattggaagtatttcacagtttaaagatctcatatgtgagataaattaattcaagggcatcttctaaataaccatttaaattctactgtattaa |
23149451 |
T |
|
| Q |
319 |
tcaagtttttcttaaatttatttagaagaggttaggttattgttcttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgct |
418 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23149452 |
tcaagtttttcttaaagttatttagaagaggttaggttattgttcttaccaagattatggccttgatattgtctttggtcaagaaaaattccttgttgct |
23149551 |
T |
|
| Q |
419 |
gccatcttcatattttatgagaacatctaccagatcttgatctgtttcagcttggtcataactgccttttgacttggcctctttgtgctcggtgatgatg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23149552 |
gccatcttcatattttatgagaacatctaccagatcttgatctgtttcagcttggtcataactgccttttgacttggcctctttgtgctcggtgatgatg |
23149651 |
T |
|
| Q |
519 |
t |
519 |
Q |
| |
|
| |
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|
| T |
23149652 |
t |
23149652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 361 - 519
Target Start/End: Original strand, 23140884 - 23141042
Alignment:
| Q |
361 |
ttcttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatcttgatc |
460 |
Q |
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||||||||| ||||||||||||||||||||||||||| || |||||||| |||||| | || ||||| |||||||||||||||||||| | ||||| ||| |
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| T |
23140884 |
ttcttaccaggattatggccttgatattgtctttagttaaaaaaaattctttgttgtttccgtcttcgtattttatgagaacatctactatatcttcatc |
23140983 |
T |
|
| Q |
461 |
tgtttcagcttggtcataactgccttttgacttggcctctttgtgctcggtgatgatgt |
519 |
Q |
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|| |||| |||||||||| || |||||||||||||||| |||||||| ||||||||| |
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| T |
23140984 |
tgattcaccttggtcatagttggcttttgacttggcctccttgtgctcactgatgatgt |
23141042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 365 - 519
Target Start/End: Original strand, 23024891 - 23025045
Alignment:
| Q |
365 |
taccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatcttgatctgtt |
464 |
Q |
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||||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |||| | |
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| T |
23024891 |
taccatgattatggccttgatattgtctatagttaagaaaaattccttgttattgccatcttgatattttaagagaacatctaccagatcttcgtctgat |
23024990 |
T |
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| Q |
465 |
tcagcttggtcataactgccttttgacttggcctctttgtgctcggtgatgatgt |
519 |
Q |
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||| |||||||| | || ||||||||||||||||||||||| ||||||||| |
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| T |
23024991 |
tcaacttggtcaaattctccctttgacttggcctctttgtgctcattgatgatgt |
23025045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 456
Target Start/End: Original strand, 23033475 - 23033568
Alignment:
| Q |
363 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
456 |
Q |
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|||||||||||||| ||||||||||||||||| || ||||| || || | || || ||||| |||||||||| ||||| ||||||||||||| |
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| T |
23033475 |
cttaccaagattatagccttgatattgtcttttgttaagaagaaatcttggtcactaccatcctcatattttaagagaatgtctaccagatctt |
23033568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 456
Target Start/End: Original strand, 23039660 - 23039753
Alignment:
| Q |
363 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
456 |
Q |
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||||||| |||||||||||||||||||| ||| || ||| ||| |||| |||||| || || |||||||||| |||||| ||||| ||||||| |
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| T |
23039660 |
cttaccaggattatggccttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagagaacgtctacgagatctt |
23039753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 456
Target Start/End: Original strand, 23146535 - 23146628
Alignment:
| Q |
363 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
456 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || ||| ||| |||| |||||| || || |||||||||| |||||| |||| |||||||| |
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| T |
23146535 |
cttaccaggattatggccttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagagaacgtctatcagatctt |
23146628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 23024666 - 23024704
Alignment:
| Q |
19 |
atgtctcgcctccagcaccaaaaatgtcctgaacaataa |
57 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
23024666 |
atgtctcacctccagcaccaaaaatgtcctgaacaataa |
23024704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 23140440 - 23140478
Alignment:
| Q |
19 |
atgtctcgcctccagcaccaaaaatgtcctgaacaataa |
57 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
23140440 |
atgtctcacctccagcaccaaaaatgtcctgaacaataa |
23140478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 456
Target Start/End: Original strand, 23017869 - 23017962
Alignment:
| Q |
363 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || | || || | || || ||||| |||||||||| ||||| ||||||||||||| |
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|
| T |
23017869 |
cttaccaagattatggccttgatattgtcttttgttaatgagaaatcttggtcactaccatcctcatattttaagagaatgtctaccagatctt |
23017962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 23033093 - 23033125
Alignment:
| Q |
19 |
atgtctcgcctccagcaccaaaaatgtcctgaa |
51 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
23033093 |
atgtctcgcctccagcaccaaaaatgtcctgaa |
23033125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 456
Target Start/End: Original strand, 23036783 - 23036876
Alignment:
| Q |
363 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
456 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||||| ||| || | ||| |||||||| || || |||| |||||| ||||| ||||||| |
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|
| T |
23036783 |
cttaccattattatggccttgatattgttttttgtcaaggaaaggtcttggtttctgccatcctcgtaatttaagagaacgtctacgagatctt |
23036876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 23036564 - 23036596
Alignment:
| Q |
19 |
atgtctcgcctccagcaccaaaaatgtcctgaa |
51 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |
|
|
| T |
23036564 |
atgtctcacctccagcaccaaaaatgtcctgaa |
23036596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 456
Target Start/End: Complemental strand, 5900 - 5807
Alignment:
| Q |
363 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
456 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||| || ||| |||| ||||||||||| |||||||||||||||| |||||| |||| ||||||| |
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| T |
5900 |
cttaccatgataatggctttgatattgtcttttgttaaggaaaactccttgttgctaccatcttcatattttaagagaacgtctaatagatctt |
5807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 456
Target Start/End: Original strand, 21780550 - 21780643
Alignment:
| Q |
363 |
cttaccaagattatggccttgatattgtctttagtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
456 |
Q |
| |
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||||||| ||||||||||||||||||||||| || ||| |||| ||| |||||| ||||| |||||||||| |||||| ||||| ||||||| |
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| T |
21780550 |
cttaccattattatggccttgatattgtcttttgttaaggaaaaatccaggttgctaccatcctcatattttaagagaacgtctacgagatctt |
21780643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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