View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17896_low_7 (Length: 493)
Name: NF17896_low_7
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_7 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 13 - 493
Target Start/End: Complemental strand, 28331943 - 28331464
Alignment:
| Q |
13 |
aatatatataaccaatggaaaggggaaaagcgatgaagatataaaccacctccctcaaaaacaaaatagccatgaaccaccaaacacttctactagtggt |
112 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331943 |
aatatatataaccaatggaaagggcaaaagcgat-aagatataaactacctccctcaaaaacaaaatagccatgaaccaccaaacacttctactagtggt |
28331845 |
T |
|
| Q |
113 |
tacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccaccagggccaaacccatttcccata |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28331844 |
tacctttgcaagtgcaagcattctcatctttattattagaaaagttaaacaaacccaaaattccaccaagcttccaccagggccaaacccatttcccata |
28331745 |
T |
|
| Q |
213 |
attggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatcatgacattaaaactaggaacattaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331744 |
attggaaacatcttagaacttggcaaaaacccacacaaggcactcacaaaactctcaaaaacctatggaccaatcatgacattaaaactaggaacattaa |
28331645 |
T |
|
| Q |
313 |
caaccatagtaatctcatcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcact |
412 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331644 |
caaccatagtaatctcatcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcact |
28331545 |
T |
|
| Q |
413 |
tgatcatcacaaattctcaatagggacacttccaacactagctttgtggaagaaactaaggaaaatttgtgctacacaagt |
493 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331544 |
tgatcatcacaaattctcaataggaacacttccaacattagctttgtggaagaaactaaggaaaatttgtgctacacaagt |
28331464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 83 - 493
Target Start/End: Complemental strand, 28321395 - 28320985
Alignment:
| Q |
83 |
catgaaccaccaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaag |
182 |
Q |
| |
|
|||| |||| |||||||||||||||||| || |||||| |||||||| |||||||||||| |||||||||||| || |||||||||||||| ||||| |
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| T |
28321395 |
catggaccatcaaacacttctactagtgatttcctttgtaagtgcaaccattctcatcttcattcttagaaaatcaaaccaaacccaaaattctactaaa |
28321296 |
T |
|
| Q |
183 |
cttccaccagggccaaacccatttcccataattggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggac |
282 |
Q |
| |
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||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| |
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| T |
28321295 |
cttccaccagggccaaagccacttcccatcattggaaacatcttagaacttggcaaaaatccacacaaggcattaacaaaactctcaaaaatctatggac |
28321196 |
T |
|
| Q |
283 |
caatcatgacattaaaactaggaacattaacaaccatagtaatctcatcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaa |
382 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||| || |||||| ||||||||||||| ||||| || ||||| ||||| || || || |
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| T |
28321195 |
caatcatgacattaaaactaggaagcataacaaccatagtgatctcttccccacaagtagccaaacaagttttacatgacaattctcaaatcttttcaaa |
28321096 |
T |
|
| Q |
383 |
tagagtagtctcggatgcaatttgtgcacttgatcatcacaaattctcaatagggacacttccaacactagctttgtggaagaaactaaggaaaatttgt |
482 |
Q |
| |
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|||| ||| | ||||||| | |||| |||||||| ||||||||||| | ||| |||||||| || ||||||||||||||||||||||| |||| |
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| T |
28321095 |
tagaactgtcccacatgcaatctctgcagttgatcatgacaaattctcagttgggtgggttccaacattaaatttgtggaagaaactaaggaaaagttgt |
28320996 |
T |
|
| Q |
483 |
gctacacaagt |
493 |
Q |
| |
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|||||| |||| |
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| T |
28320995 |
gctacaaaagt |
28320985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 91 - 493
Target Start/End: Complemental strand, 28310813 - 28310411
Alignment:
| Q |
91 |
accaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccacc |
190 |
Q |
| |
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|||||||||||||||| ||| |||||| | |||| |||||||||||||| ||| ||| |||| | || ||||| |||||||| || || |||||||| |
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| T |
28310813 |
accaaacacttctactggtgattacctctttgtgtgcgagcattctcatcttcatttttaaaaaattaaaccaaactcaaaattctacaaaacttccacc |
28310714 |
T |
|
| Q |
191 |
agggccaaacccatttcccataattggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatcatg |
290 |
Q |
| |
|
||||||||| ||| ||||||| || |||||||||||| ||||||||||||||||||||| | |||| ||||| |||||||| | |||||||||||| ||| |
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| T |
28310713 |
agggccaaaaccacttcccatcataggaaacatcttacaacttggcaaaaatccacacaggacactcacaaatctctcaaacatctatggaccaattatg |
28310614 |
T |
|
| Q |
291 |
acattaaaactaggaacattaacaaccatagtaatctcatcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtag |
390 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||||||||| | |
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| T |
28310613 |
acactaaaactaggaacattaacaaccatagtaatctcatcacctcaactagccaaacaagttttacatgaaaattctcaaatcttctctaatagaactg |
28310514 |
T |
|
| Q |
391 |
tctcggatgcaatttgtgcacttgatcatcacaaattctcaatagggacacttccaacactagctttgtggaagaaactaaggaaaatttgtgctacaca |
490 |
Q |
| |
|
|| | ||||| ||||||||||||||||| ||||||| ||||| |||| ||||||||| |||||| |||||||||||||||||| ||||||||||| | |
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|
| T |
28310513 |
tcccacatgcactttgtgcacttgatcatgacaaattatcaattgggatgcttccaacattagcttcatggaagaaactaaggaaattttgtgctacaaa |
28310414 |
T |
|
| Q |
491 |
agt |
493 |
Q |
| |
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||| |
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|
| T |
28310413 |
agt |
28310411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 91 - 484
Target Start/End: Complemental strand, 28297325 - 28296932
Alignment:
| Q |
91 |
accaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccacc |
190 |
Q |
| |
|
|||||||||||||||||||| |||||| | || ||| |||||||||||| |||||||||||| | | |||||||||||||| ||||| |||||||| |
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| T |
28297325 |
accaaacacttctactagtgattacctctttgtgtacaaccattctcatcttcattcttagaaaattaatccaaacccaaaattctactaaacttccacc |
28297226 |
T |
|
| Q |
191 |
agggccaaacccatttcccataattggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatcatg |
290 |
Q |
| |
|
||||||| ||||| ||||||| || |||||||||||||||||||||||||| ||||| |||||||| |||||||||||| ||| |||||||||||||||| |
|
|
| T |
28297225 |
agggccatacccacttcccatcataggaaacatcttagaacttggcaaaaacccacataaggcactcacaaaactctcacaaaactatggaccaatcatg |
28297126 |
T |
|
| Q |
291 |
acattaaaactaggaacattaacaaccatagtaatctcatcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtag |
390 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||| ||||| |||||||||||||| |||||||||||| | |
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|
| T |
28297125 |
acactaaaactaggaacaataacaaccatagtaatttcatctccacaagtagccaaacaagccttacatgaaaattcccaaatcttctctaatagaactg |
28297026 |
T |
|
| Q |
391 |
tctcggatgcaatttgtgcacttgatcatcacaaattctcaatagggacacttccaacactagctttgtggaagaaactaaggaaaatttgtgc |
484 |
Q |
| |
|
| | ||||| || ||||| |||||||| ||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||| |||||| |
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|
| T |
28297025 |
ttccacatgcacttagtgcagttgatcatgacaaattctcaattgggtggcttccaacattagctttatggaagaaactaaggaaaagttgtgc |
28296932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 115 - 493
Target Start/End: Original strand, 28287912 - 28288290
Alignment:
| Q |
115 |
cctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccaccagggccaaacccatttcccataat |
214 |
Q |
| |
|
|||||| |||||||||||| |||||| | |||||||||||| | || ||||| |||||||| || || ||||||||||||||||| ||| ||||||| || |
|
|
| T |
28287912 |
cctttgtaagtgcaagcatcctcatcctcattcttagaaaattaaaccaaactcaaaattctacaaaacttccaccagggccaaagccacttcccatcat |
28288011 |
T |
|
| Q |
215 |
tggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatcatgacattaaaactaggaacattaaca |
314 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| | |||| ||||| |||||||| | |||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
28288012 |
aggaaacatcttacaacttggcaaaaacccacacaggacactcacaaatctctcaaacatctatggaccaattatgacactaaaactaggaacattaaca |
28288111 |
T |
|
| Q |
315 |
accatagtaatctcatcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcacttg |
414 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| ||||| |||||||| ||||| ||||| |||||| ||| | ||||||| |||||||| |
|
|
| T |
28288112 |
accatagtaatttcatcaccacaattagccaaacaagttttacatgaaaattctcaaatcttctcaaatagaactgtcccacatgcaatacatgcacttg |
28288211 |
T |
|
| Q |
415 |
atcatcacaaattctcaatagggacacttccaacactagctttgtggaagaaactaaggaaaatttgtgctacacaagt |
493 |
Q |
| |
|
||||| ||||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28288212 |
atcataacaaattctcacttgggtggcttccaacattagctttgtggaagaaactaaggaaaatttgtgctacaaaagt |
28288290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 352
Target Start/End: Complemental strand, 28336523 - 28336389
Alignment:
| Q |
220 |
acatcttagaacttggcaaaaatccacacaaggcacttacaaaa---ctctcaaaaacctatggaccaatcatgacattaaaactagg-aacattaacaa |
315 |
Q |
| |
|
|||||| ||||||| | ||||| ||||||||| |||| |||||| ||||| |||| ||| ||||||||||||||| ||||||| || ||||| |||| |
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|
| T |
28336523 |
acatctcagaactttg-aaaaacccacacaagtcactcacaaaaaaactctctaaaatctacggaccaatcatgacactaaaacttggcaacat-aacat |
28336426 |
T |
|
| Q |
316 |
ccatagtaatctcatcaccacaactagccaaacaagt |
352 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
28336425 |
ccatagtaatctcatccccacaactaaccaaacaagt |
28336389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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