View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17896_low_8 (Length: 472)
Name: NF17896_low_8
Description: NF17896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17896_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 68 - 455
Target Start/End: Complemental strand, 34602058 - 34601674
Alignment:
| Q |
68 |
ggggctaacaaccctaatttgttcgaaacaaaataccattnnnnnnnntaaaatcaagcagtaagaacaacagcaccaccagcttccttgatcttcttct |
167 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34602058 |
ggggctaacaaccctaatttgttcgaaacaaaataccataaaaaaa---aaaatcaagcagtaagaacaacagcaccaccagcttccttgatcttcttct |
34601962 |
T |
|
| Q |
168 |
cagcaatcttcgaaatcagcttagtcttaacaacaaaaggctgattctgaggcaaaacaccttttccaagaagcttaaagaacccaaactgagtgacatc |
267 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34601961 |
cagcaatcttcgaaatcagcttagtcttaacaacaaaaggctgattctgaggcaaaacaccttttccaagaagcttaaagaatccaaactgagtgacatc |
34601862 |
T |
|
| Q |
268 |
aatcacaggagctttattctccttcaaagctttctccttgacatcttgtggaatgagagaagcgatcttgtcgatgttgacaatagggttatagaatttg |
367 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34601861 |
aatcataggagctttattctccttcaaagctttctccttcacatcttgtggaatgagagaagcgatcttgtcgatgttgacaatagggttatagaatttg |
34601762 |
T |
|
| Q |
368 |
ttacggagcttgtgaaagtaacgcataccaaccttaccgaagtaacctggatgatacttgtcgaagaggatacgatggtggtgcattc |
455 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34601761 |
ttacgaagcttgtgaaagtagcgcataccaaccttaccgaagtaacctggatgatacttgtcgaagaggatacgatggtggtgcattc |
34601674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 123 - 453
Target Start/End: Complemental strand, 14261376 - 14261046
Alignment:
| Q |
123 |
aagcagtaagaacaacagcaccaccagcttccttgatcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggctgattctgaggcaa |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
14261376 |
aagcagtaagaacaacagcaccaccagcttccttaatcttcttctccgcaatcttcgaaatcagcttcgtcttcacaacaaaaggctgattctgcggcaa |
14261277 |
T |
|
| Q |
223 |
aacaccttttccaagaagcttaaagaacccaaactgagtgacatcaatcacaggagctttattctccttcaaagctttctccttgacatcttgtggaatg |
322 |
Q |
| |
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||||||||| || | ||||||||| |||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| |||||||| ||||| |
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| T |
14261276 |
aacacctttccctaaaagcttaaaaaacccaaactgagtaacatcaatcaccggcgctttgttctccttcaaagctttctccttaacatcttgaggaatc |
14261177 |
T |
|
| Q |
323 |
agagaagcgatcttgtcgatgttgacaatagggttatagaatttgttacggagcttgtgaaagtaacgcataccaaccttaccgaagtaacctggatgat |
422 |
Q |
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| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
14261176 |
aaagaagcgatcttgtcgatgttgacaatggggttatagaatttgttacggagcttgtgaaagtaacgcataccaactttaccgaagtaacctggatggt |
14261077 |
T |
|
| Q |
423 |
acttgtcgaagaggatacgatggtggtgcat |
453 |
Q |
| |
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|||||||||||||||| |||||||| ||||| |
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|
| T |
14261076 |
acttgtcgaagaggatgcgatggtgatgcat |
14261046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 123 - 344
Target Start/End: Complemental strand, 49425511 - 49425291
Alignment:
| Q |
123 |
aagcagtaagaacaacagcaccaccagcttccttgatcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggctgattctgaggcaa |
222 |
Q |
| |
|
|||||| ||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49425511 |
aagcagcaagaacaccagcaccaacaacttccttgttcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggttgattctgaggcaa |
49425412 |
T |
|
| Q |
223 |
aacaccttttccaagaagcttaaagaacccaaactgagtgacatcaatcacaggagctttattctccttcaaagctttctccttgacatcttgtggaatg |
322 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||||| | ||| ||||||||||||||| |||| ||||||||||||||||| ||||| ||||||| ||||||| |
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| T |
49425411 |
aacatattttccaagaa-cttaaagtacccaaattaagtaacatcaatcacaggacctttgttctccttcaaagctttttccttcacatcttttggaatg |
49425313 |
T |
|
| Q |
323 |
agagaagcgatcttgtcgatgt |
344 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
49425312 |
agagaagcgatcttgtcgatgt |
49425291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 49425292 - 49425246
Alignment:
| Q |
409 |
gtaacctggatgatacttgtcgaagaggatacgatggtggtgcattc |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||| ||||| |
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|
| T |
49425292 |
gtaacctggatgatacttgtcgaagaggatacggtgatggttcattc |
49425246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 123 - 453
Target Start/End: Complemental strand, 29101940 - 29101607
Alignment:
| Q |
123 |
aagcagtaagaacaacagcaccaccagcttccttgatcttcttctcagcaatcttcgaaatcagcttagtcttaacaacaaaaggctgattctgaggcaa |
222 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| | ||||||||||| | |||||||| ||||| |
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|
| T |
29101940 |
aagcagtaagaagaacagcaccaccagcttccttaatcttcttctccgcaatcttcgaaaccagcttcgccttaacaacaacactctgattcttcggcaa |
29101841 |
T |
|
| Q |
223 |
aacaccttttccaagaagcttaaagaacccaaactgagtgacatcaatcacaggag---ctttattctccttcaaagctttctccttgacatcttgtgga |
319 |
Q |
| |
|
|| ||||| ||||| | |||||||||||||||||| || |||||||||||||||| | | ||| ||| ||||||| ||||| || ||||| || |
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|
| T |
29101840 |
cactcctttcccaagcaccttaaagaacccaaactgcgtaacatcaatcacaggagcaacatccttcgacttagaagctttgtccttcacttcttgaggt |
29101741 |
T |
|
| Q |
320 |
atgagagaagcgatcttgtcgatgttgacaatagggttatagaatttgttacggagcttgtgaaagtaacgcataccaaccttaccgaagtaacctggat |
419 |
Q |
| |
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| ||||| || | || ||||| || | || | | ||||||||| ||||| |||||||||||||||||||| || || ||||||||||| || | |
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| T |
29101740 |
agaagagaccagagagtatcaatgttcacggtgggactgtggaatttgttgcggagtttgtgaaagtaacgcatacccactttgccgaagtaaccagggt |
29101641 |
T |
|
| Q |
420 |
gatacttgtcgaagaggatacgatggtggtgcat |
453 |
Q |
| |
|
||||||||||||||||||| || || |||||||| |
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|
| T |
29101640 |
gatacttgtcgaagaggatgcggtgatggtgcat |
29101607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 31889907 - 31890012
Alignment:
| Q |
123 |
aagcagtaagaacaacagcaccaccagcttccttgatcttcttctc---agcaatcttcgaaatcagcttagtcttaac--aacaaaaggctgattctga |
217 |
Q |
| |
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|||||| ||||||| || ||||| ||| ||||||||||||||||| ||||||||| |||||||||| ||||||||| || |||||||||||||||| |
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| T |
31889907 |
aagcagcaagaacaccaacaccaacagtttccttgatcttcttcttcttagcaatctttgaaatcagctcagtcttaacaaaaaaaaaggctgattctga |
31890006 |
T |
|
| Q |
218 |
ggcaaa |
223 |
Q |
| |
|
|||||| |
|
|
| T |
31890007 |
ggcaaa |
31890012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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