View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17897_high_13 (Length: 501)

Name: NF17897_high_13
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17897_high_13
NF17897_high_13
[»] chr6 (8 HSPs)
chr6 (133-455)||(34360556-34360878)
chr6 (12-162)||(34360406-34360556)
chr6 (313-354)||(8374226-8374267)
chr6 (316-353)||(11102197-11102234)
chr6 (318-354)||(9727584-9727620)
chr6 (318-354)||(14465828-14465864)
chr6 (318-354)||(22721342-22721378)
chr6 (320-356)||(31642689-31642725)
[»] chr3 (14 HSPs)
chr3 (422-493)||(25291386-25291457)
chr3 (316-354)||(6419668-6419706)
chr3 (313-354)||(43904498-43904539)
chr3 (318-354)||(46316480-46316516)
chr3 (316-353)||(23525912-23525949)
chr3 (313-346)||(29216890-29216923)
chr3 (313-354)||(47570367-47570408)
chr3 (313-354)||(49285592-49285633)
chr3 (318-354)||(11250047-11250083)
chr3 (314-354)||(20625655-20625695)
chr3 (318-354)||(35359806-35359842)
chr3 (318-354)||(35966331-35966367)
chr3 (318-354)||(36518189-36518225)
chr3 (318-354)||(36540194-36540230)
[»] chr7 (11 HSPs)
chr7 (313-354)||(30552488-30552529)
chr7 (318-354)||(31299998-31300034)
chr7 (316-354)||(2228083-2228121)
chr7 (316-354)||(31807052-31807090)
chr7 (316-354)||(40857345-40857383)
chr7 (313-354)||(38261085-38261126)
chr7 (318-354)||(27339731-27339767)
chr7 (318-354)||(40677107-40677143)
chr7 (318-354)||(43188621-43188657)
chr7 (318-354)||(44327729-44327765)
chr7 (318-354)||(45594889-45594925)
[»] chr4 (17 HSPs)
chr4 (313-354)||(939671-939712)
chr4 (313-354)||(7413176-7413217)
chr4 (313-354)||(7459256-7459297)
chr4 (313-353)||(17518477-17518517)
chr4 (316-346)||(5060423-5060453)
chr4 (316-354)||(31633860-31633898)
chr4 (312-354)||(49652071-49652113)
chr4 (313-354)||(28983816-28983857)
chr4 (313-346)||(35615969-35616002)
chr4 (317-354)||(54065282-54065319)
chr4 (318-354)||(9064791-9064827)
chr4 (318-354)||(16971685-16971721)
chr4 (318-354)||(32233701-32233737)
chr4 (318-354)||(47462039-47462075)
chr4 (320-360)||(48860093-48860133)
chr4 (318-354)||(51425416-51425452)
chr4 (318-354)||(54864485-54864521)
[»] chr1 (7 HSPs)
chr1 (313-354)||(23913692-23913733)
chr1 (318-354)||(22561161-22561197)
chr1 (313-353)||(23809888-23809928)
chr1 (318-354)||(42630988-42631024)
chr1 (318-354)||(49500950-49500986)
chr1 (318-354)||(49948330-49948366)
chr1 (318-354)||(50145135-50145171)
[»] chr5 (14 HSPs)
chr5 (318-354)||(21067526-21067562)
chr5 (313-356)||(4429942-4429985)
chr5 (318-354)||(972597-972633)
chr5 (318-354)||(1277527-1277563)
chr5 (318-354)||(5203642-5203678)
chr5 (318-354)||(17986057-17986093)
chr5 (318-354)||(23219117-23219153)
chr5 (318-354)||(26310751-26310787)
chr5 (318-354)||(27003966-27004002)
chr5 (313-353)||(29069712-29069752)
chr5 (318-354)||(32273981-32274017)
chr5 (318-354)||(36136865-36136901)
chr5 (313-357)||(37320333-37320377)
chr5 (318-354)||(40596045-40596081)
[»] chr2 (9 HSPs)
chr2 (318-354)||(36685406-36685442)
chr2 (318-360)||(16534940-16534982)
chr2 (313-354)||(10202254-10202295)
chr2 (313-354)||(31819722-31819763)
chr2 (318-354)||(7957989-7958025)
chr2 (318-354)||(15488838-15488874)
chr2 (318-354)||(18055948-18055984)
chr2 (318-354)||(19967823-19967859)
chr2 (318-354)||(43461337-43461373)
[»] scaffold0014 (1 HSPs)
scaffold0014 (318-356)||(195830-195868)
[»] chr8 (15 HSPs)
chr8 (316-354)||(10286468-10286506)
chr8 (313-354)||(13634930-13634971)
chr8 (313-354)||(13735343-13735384)
chr8 (313-346)||(24430144-24430177)
chr8 (313-354)||(41897908-41897949)
chr8 (318-354)||(3673846-3673882)
chr8 (318-354)||(5917371-5917407)
chr8 (318-354)||(14725391-14725427)
chr8 (318-354)||(15129723-15129759)
chr8 (318-354)||(20150310-20150346)
chr8 (318-354)||(20662611-20662647)
chr8 (313-353)||(24420005-24420045)
chr8 (318-354)||(34642440-34642476)
chr8 (318-354)||(35058414-35058450)
chr8 (316-356)||(44225274-44225314)
[»] scaffold0057 (1 HSPs)
scaffold0057 (318-354)||(64372-64408)


Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 133 - 455
Target Start/End: Original strand, 34360556 - 34360878
Alignment:
Q  133 ttttccttttcaaattttaaatttctaattatcaatggaataaatttacattcttttgcttcttctaatccttttataactttacttccgtacattaaaa 232  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34360556 ttttccttttcaaattttaaatttctaattat-aatggaataaatttacattcttttgcttcttctaatccttttataactttacttccgtacattaaaa 34360654  T
Q  233 atgttaatttttgtctaccagtc-taactcaacaaatnnnnnnntatcgaccgtagtttaaacgccgacacatacatttaattatatgtgtgagtttata 331  Q
    |||||| |||||||||||||||| |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34360655 atgttagtttttgtctaccagtcataactcaacaaataaaaaaatatcgaccgtagtttaaacgccgacacatacatttaattatatgtgtgagtttata 34360754  T
Q  332 ataactttgtcatttggtctatcaatccacttaaaccactcccgccgcatacaatttctcaattgccgctatacaaagactgatcctgttaaacaattaa 431  Q
    || |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||     
T  34360755 atgactttgtcatttggtctatcaacccacttaaaccactcccgccgcatacagtttctcaattcccgctatacaaagactgatcctgttaaacaattat 34360854  T
Q  432 gttaaccatgcatttcaaggtata 455  Q
    ||||||||||||||||| ||||||    
T  34360855 gttaaccatgcatttcagggtata 34360878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 34360406 - 34360556
Alignment:
Q  12 cataggtttaccagtatataagcatggaggaatttgtacaaatgcactttgattggagtatatatgtaagtaaattatcttttaatgtgttgaattgatt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  34360406 cataggtttaccagtatataagcatggaggaatttgtacaaatacactttgattggagtatatatgtaagcaaattatctttcaatgtgttgaattgatt 34360505  T
Q  112 tgttgaatttcttttaacatcttttccttttcaaattttaaatttctaatt 162  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  34360506 tgttgaatttcttttaacattttttccttttcaaattttaaatttcaaatt 34360556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 8374226 - 8374267
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||||||||  ||||||||||| |||||||    
T  8374226 ttatatgtgtgagtttataatggctttgtcattttgtctatc 8374267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 11102197 - 11102234
Alignment:
Q  316 tatgtgtgagtttataataactttgtcatttggtctat 353  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  11102197 tatgtgtgagtttatgataactttgtcatttcgtctat 11102234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 9727584 - 9727620
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  9727584 tgtgtgagtttataatgactttgtcatttcgtctatc 9727620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 14465864 - 14465828
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  14465864 tgtgtgagtttataatgactttgtcatttcgtctatc 14465828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 22721342 - 22721378
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  22721342 tgtgtgagtttataatgactttgtcatttcgtctatc 22721378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 31642725 - 31642689
Alignment:
Q  320 tgtgagtttataataactttgtcatttggtctatcaa 356  Q
    |||||||||||| |||||||||||||| |||||||||    
T  31642725 tgtgagtttatattaactttgtcatttcgtctatcaa 31642689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 493
Target Start/End: Original strand, 25291386 - 25291457
Alignment:
Q  422 aaacaattaagttaaccatgcatttcaaggtatagctgttgaaattcatgtggcttgaacaatatggaggag 493  Q
    ||||||||| |||||| ||| |||||| ||||||||||||||||||||||| ||  |||||| |||||||||    
T  25291386 aaacaattatgttaactatgtatttcatggtatagctgttgaaattcatgtagcaggaacaacatggaggag 25291457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 6419706 - 6419668
Alignment:
Q  316 tatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  6419706 tatgtgtgagtttataataactttgtcatttcgtctatc 6419668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 43904539 - 43904498
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  43904539 ttatgtgtgtgagtttataataactttgtcatttcgtctatc 43904498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 46316516 - 46316480
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||||||||||||||| |||||||    
T  46316516 tgtgtgagtttataataactttgtcatttcgtctatc 46316480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 23525949 - 23525912
Alignment:
Q  316 tatgtgtgagtttataataactttgtcatttggtctat 353  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  23525949 tatgtgtgagtttataatgactttgtcatttcgtctat 23525912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 29216890 - 29216923
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcattt 346  Q
    |||| |||||||||||||||||||||||||||||    
T  29216890 ttatgtgtgtgagtttataataactttgtcattt 29216923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 47570367 - 47570408
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  47570367 ttatgtgtgtgagtttataatgactttgtcattttgtctatc 47570408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 49285592 - 49285633
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  49285592 ttatgtgtgtgagtttataatgactttgtcatttcgtctatc 49285633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 11250047 - 11250083
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  11250047 tgtgtgagtttataatgactttgtcatttcgtctatc 11250083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 20625695 - 20625655
Alignment:
Q  314 tatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| ||| |||||||||||| |||||||    
T  20625695 tatatgtgtgagtttacaatgactttgtcatttcgtctatc 20625655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 35359806 - 35359842
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  35359806 tgtgtgagtttataatgactttgtcatttcgtctatc 35359842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 35966331 - 35966367
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  35966331 tgtgtgagtttataatgactttgtcatttcgtctatc 35966367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 36518189 - 36518225
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  36518189 tgtgtgagtttataatgactttgtcatttcgtctatc 36518225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 36540194 - 36540230
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  36540194 tgtgtgagtttataatgactttgtcatttcgtctatc 36540230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 30552488 - 30552529
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  30552488 ttatatgcgtgagtttataataactttgtcatttcgtctatc 30552529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 31300034 - 31299998
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||||||||||||||| |||||||    
T  31300034 tgtgtgagtttataataactttgtcatttcgtctatc 31299998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 2228121 - 2228083
Alignment:
Q  316 tatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  2228121 tatgtgtgagtttataatgactttgtcatttcgtctatc 2228083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 31807090 - 31807052
Alignment:
Q  316 tatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  31807090 tatgtgtgagtttataatgactttgtcatttcgtctatc 31807052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 40857383 - 40857345
Alignment:
Q  316 tatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  40857383 tatgtgtgaatttataataactttgtcatttcgtctatc 40857345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 38261085 - 38261126
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  38261085 ttatgtgtgtgagtttataatgactttgtcatttcgtctatc 38261126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 27339767 - 27339731
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  27339767 tgtgtgagtttataatgactttgtcatttcgtctatc 27339731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 40677107 - 40677143
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  40677107 tgtgtgagtttataatagctttgtcatttcgtctatc 40677143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 43188621 - 43188657
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  43188621 tgtgtgagtttataatgactttgtcatttcgtctatc 43188657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 44327729 - 44327765
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  44327729 tgtgtgagtttataatagctttgtcatttcgtctatc 44327765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 45594889 - 45594925
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  45594889 tgtgtgagtttataatgactttgtcatttcgtctatc 45594925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 939671 - 939712
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  939671 ttatgtgtgtgagtttataataactttgtcatttcgtctatc 939712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 7413176 - 7413217
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  7413176 ttatatgtgtgagtttataatgactttgtcatttcgtctatc 7413217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 7459256 - 7459297
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  7459256 ttatatgtgtgagtttataatgactttgtcatttcgtctatc 7459297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 17518517 - 17518477
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctat 353  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  17518517 ttatgtgtgtgagtttataataactttgtcatttcgtctat 17518477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 346
Target Start/End: Complemental strand, 5060453 - 5060423
Alignment:
Q  316 tatgtgtgagtttataataactttgtcattt 346  Q
    |||||||||||||||||||||||||||||||    
T  5060453 tatgtgtgagtttataataactttgtcattt 5060423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Original strand, 31633860 - 31633898
Alignment:
Q  316 tatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  31633860 tatgtgtgagtttataataaatttgtcatttcgtctatc 31633898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 49652113 - 49652071
Alignment:
Q  312 attatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||||||||||  |||||||||| |||||||    
T  49652113 attatatgtgtgagtttataatagttttgtcatttcgtctatc 49652071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 28983816 - 28983857
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  28983816 ttatgtgtgtgagtttataatgactttgtcattttgtctatc 28983857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 35615969 - 35616002
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcattt 346  Q
    |||| |||||||||||||||||||||||||||||    
T  35615969 ttatgtgtgtgagtttataataactttgtcattt 35616002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 54065319 - 54065282
Alignment:
Q  317 atgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  54065319 atgtgtgagtttacaataactttgtcatttcgtctatc 54065282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 9064827 - 9064791
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  9064827 tgtgtgagtttataatgactttgtcattttgtctatc 9064791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 16971721 - 16971685
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||||||||||||||  |||||||    
T  16971721 tgtgtgagtttataataactttgtcattccgtctatc 16971685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 32233701 - 32233737
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  32233701 tgtgtgagtttataatgactttgtcatttcgtctatc 32233737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 47462075 - 47462039
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  47462075 tgtgtgagtttataatgactttgtcatttcgtctatc 47462039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 48860093 - 48860133
Alignment:
Q  320 tgtgagtttataataactttgtcatttggtctatcaatcca 360  Q
    |||||||||||||| |||||||||||| ||||||| |||||    
T  48860093 tgtgagtttataatgactttgtcatttcgtctatctatcca 48860133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 51425416 - 51425452
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  51425416 tgtgtgagtttataatgactttgtcatttcgtctatc 51425452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 54864485 - 54864521
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  54864485 tgtgtgagtttataatgactttgtcatttcgtctatc 54864521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 23913692 - 23913733
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  23913692 ttatgtgtgtgagtttataataactttgtcattttgtctatc 23913733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 22561197 - 22561161
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||||||||||||||| |||||||    
T  22561197 tgtgtgagtttataataactttgtcattttgtctatc 22561161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 23809928 - 23809888
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctat 353  Q
    |||| |||||||||||||||| |||||||||||| ||||||    
T  23809928 ttatgtgtgtgagtttataatgactttgtcattttgtctat 23809888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 42631024 - 42630988
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  42631024 tgtgtgagtttataatgactttgtcatttcgtctatc 42630988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 49500950 - 49500986
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  49500950 tgtgtgagtttataatagctttgtcatttcgtctatc 49500986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 49948330 - 49948366
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  49948330 tgtgtgagtttataatgactttgtcatttcgtctatc 49948366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 50145171 - 50145135
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  50145171 tgtgtgagtttataatgactttgtcatttcgtctatc 50145135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 21067526 - 21067562
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||||||||||||||| |||||||    
T  21067526 tgtgtgagtttataataactttgtcatttcgtctatc 21067562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 356
Target Start/End: Complemental strand, 4429985 - 4429942
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatcaa 356  Q
    |||| |||||||||||||||||||||| |||||| |||||||||    
T  4429985 ttatgtgtgtgagtttataataactttatcatttcgtctatcaa 4429942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 972633 - 972597
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  972633 tgtgtgagtttataatgactttgtcatttcgtctatc 972597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 1277527 - 1277563
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  1277527 tgtgtgagtttataatgactttgtcatttcgtctatc 1277563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 5203642 - 5203678
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  5203642 tgtgtgagtttataatgactttgtcattttgtctatc 5203678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 17986093 - 17986057
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  17986093 tgtgtgagtttataatagctttgtcatttcgtctatc 17986057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 23219153 - 23219117
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  23219153 tgtgtgagtttataatgactttgtcatttcgtctatc 23219117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 26310787 - 26310751
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  26310787 tgtgtgagtttataatgactttgtcatttcgtctatc 26310751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 27004002 - 27003966
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  27004002 tgtgtgagtttataatgactttgtcatttcgtctatc 27003966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 29069712 - 29069752
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctat 353  Q
    |||||||||||||||||||| | ||||||||||| ||||||    
T  29069712 ttatatgtgtgagtttataacagctttgtcatttcgtctat 29069752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 32274017 - 32273981
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  32274017 tgtgtgagtttataatgactttgtcatttcgtctatc 32273981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 36136901 - 36136865
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||||| |||||||||| |||||||    
T  36136901 tgtgtgagtttataataattttgtcatttcgtctatc 36136865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 37320333 - 37320377
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatcaat 357  Q
    ||||||||||||||||||||| | ||||||||||  |||||||||    
T  37320333 ttatatgtgtgagtttataattattttgtcatttcttctatcaat 37320377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 40596045 - 40596081
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  40596045 tgtgtgagtttataatgactttgtcatttcgtctatc 40596081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 36685442 - 36685406
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||||||||||||||| |||||||    
T  36685442 tgtgtgagtttataataactttgtcatttcgtctatc 36685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 16534982 - 16534940
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatcaatcca 360  Q
    ||||||||||||||||| ||||||||||| ||||||| |||||    
T  16534982 tgtgtgagtttataatagctttgtcatttcgtctatctatcca 16534940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 10202254 - 10202295
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||||||||  ||||||||||| |||||||    
T  10202254 ttatatgtgtgagtttataatggctttgtcatttcgtctatc 10202295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 31819722 - 31819763
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||| ||||||||||||||||| ||||||||||| |||||||    
T  31819722 ttatgtgtgtgagtttataatagctttgtcatttcgtctatc 31819763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 7958025 - 7957989
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  7958025 tgtgtgagtttataatagctttgtcatttcgtctatc 7957989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 15488838 - 15488874
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  15488838 tgtgtgagtttataatgactttgtcatttcgtctatc 15488874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 18055948 - 18055984
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  18055948 tgtgtgagtttataatgactttgtcatttcgtctatc 18055984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 19967823 - 19967859
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  19967823 tgtgtgagtttataatgactttgtcatttcgtctatc 19967859  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 43461373 - 43461337
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  43461373 tgtgtgagtttataatgactttgtcatttcgtctatc 43461337  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 356
Target Start/End: Original strand, 195830 - 195868
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatcaa 356  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  195830 tgtgtgagtttataatgactttgtcatttcgtctatcaa 195868  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 10286506 - 10286468
Alignment:
Q  316 tatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  10286506 tatgtgtgagtttataatgactttgtcatttcgtctatc 10286468  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 13634930 - 13634971
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  13634930 ttatgtgtgtgagtttataatgactttgtcattttgtctatc 13634971  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 13735343 - 13735384
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  13735343 ttatgtgtgtgagtttataatgactttgtcattttgtctatc 13735384  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 24430144 - 24430177
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcattt 346  Q
    ||||||||||||||||||||||||||| ||||||    
T  24430144 ttatatgtgtgagtttataataactttatcattt 24430177  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 41897908 - 41897949
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||| |||||||||||||||||| |||||||||| |||||||    
T  41897908 ttatgtgtgtgagtttataataattttgtcatttcgtctatc 41897949  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 3673882 - 3673846
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  3673882 tgtgtgagtttataatgactttgtcatttcgtctatc 3673846  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 5917371 - 5917407
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  5917371 tgtgtgagtttataatgactttgtcatttcgtctatc 5917407  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 14725391 - 14725427
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  14725391 tgtgtgagtttataatgactttgtcatttcgtctatc 14725427  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 15129723 - 15129759
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  15129723 tgtgtgagtttataatagctttgtcatttcgtctatc 15129759  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 20150310 - 20150346
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  20150310 tgtgtgagtttataatagctttgtcatttcgtctatc 20150346  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 20662611 - 20662647
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  20662611 tgtgtgagtttataatgactttgtcatttcgtctatc 20662647  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 24420045 - 24420005
Alignment:
Q  313 ttatatgtgtgagtttataataactttgtcatttggtctat 353  Q
    |||| ||||||||||||||||||||||| ||||| ||||||    
T  24420045 ttatctgtgtgagtttataataactttgccatttcgtctat 24420005  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 34642476 - 34642440
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  34642476 tgtgtgagtttataatgactttgtcatttcgtctatc 34642440  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 35058414 - 35058450
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  35058414 tgtgtgagtttataatgactttgtcatttcgtctatc 35058450  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 44225274 - 44225314
Alignment:
Q  316 tatgtgtgagtttataataactttgtcatttggtctatcaa 356  Q
    |||||||||||||||||| | |||||||||| |||||||||    
T  44225274 tatgtgtgagtttataatgattttgtcatttcgtctatcaa 44225314  T

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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 64372 - 64408
Alignment:
Q  318 tgtgtgagtttataataactttgtcatttggtctatc 354  Q
    |||||||||||||||| |||||||||||| |||||||    
T  64372 tgtgtgagtttataatgactttgtcatttcgtctatc 64408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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