View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_14 (Length: 470)
Name: NF17897_high_14
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 453
Target Start/End: Original strand, 20703641 - 20704096
Alignment:
| Q |
10 |
ataatacttgaaaatgtgaatctatgtaacacttgagagattacataccctttagccccttagcctcaactaagtggttgcaattcccataactaaaaag |
109 |
Q |
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| T |
20703641 |
ataatacttgaaaatgcgaatctatgtaacacttgagagattacataccctttagccccttagcctcaactaagtggttgcaattcccataactaaaaag |
20703740 |
T |
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| Q |
110 |
tatcacattgtttgggaatcaagactaaaggtagtttataaacaacacctacact------------cctcaacctaactagatgtcttttacaaatgaa |
197 |
Q |
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| T |
20703741 |
tatcacattatttgagaatcaagactaaaggtagtttataaacgattcctacactactcattgaaagcctcaacctaactagatgtcttttacaaatgaa |
20703840 |
T |
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| Q |
198 |
aaatctagaacaattgttctattaggagattatcatcaccaatattcattgagtattcatgtgcttgatactcctctatcctaaaataattggtgcacta |
297 |
Q |
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| T |
20703841 |
aaatctagaacaattgttctattaggagattatcatcactaatattcattgagtattcatgtgcttgatacttctctatcctaaaataattggtgcacta |
20703940 |
T |
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| Q |
298 |
gaaataaactaacttttgaagatgcattgtaaattgattagctatatgatctcagttatcttggctcaacttctggtaacaaaacaagtgtttgatattg |
397 |
Q |
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| T |
20703941 |
gaaataaactaacttttgaagatgcatcgtaaattgattagctatattatctcagttatcttgggtcaacttctggtaacaaaacaagtgtttgatattg |
20704040 |
T |
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| Q |
398 |
gttctatttctccttcctcccattcacaagtagggattttcgttagcagtgtattg |
453 |
Q |
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| T |
20704041 |
gttctatttctccttcctcccattcacaagtagggattttcgttagcagtgtattg |
20704096 |
T |
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Back To:
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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 1334495 - 1334548
Alignment:
| Q |
104 |
aaaaagtatcacattgtttgggaatcaagactaaaggtagtttataaacaacac |
157 |
Q |
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||||||| |||||||| |||| |||||||| |||| |||||||||||||||||| |
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| T |
1334495 |
aaaaagtctcacattgattggaaatcaagattaaaagtagtttataaacaacac |
1334548 |
T |
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