View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_16 (Length: 448)
Name: NF17897_high_16
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_16 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 57 - 433
Target Start/End: Complemental strand, 4286 - 3929
Alignment:
| Q |
57 |
aaaagaaatggtatatataaat---ctcattactcccattatgatcgactacagctaccacatttctcatttcttctcctccctcaccatggctatctga |
153 |
Q |
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| T |
4286 |
aaaaaaaatggtatatataaattccctcattactcccattatgatcgactacagctaccacatttctcatttcttctcttccctcaccatggc------- |
4194 |
T |
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| Q |
154 |
tacaaatgatatcactatcacaatccaaaaggtatgcattcttggcctttctgaggacttgaaagatgacattgagaaaatttcagtatacattcttggc |
253 |
Q |
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| T |
4193 |
---------------tatcacaacccaaaaggtatgcattcttggcctttctcaggacttgaaagatcacattgagaaaatttcagtatgcattcttggc |
4109 |
T |
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| Q |
254 |
ctttgcatgagtttcttctcatatgaccctcccacatcagagatagtgaaagagtttacgatatttgctgcgtcgtcatttgtatgttacattctctcaa |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4108 |
ctttgcatgagtttcttctcatatgaccctcccacatcagagatagtgaaagagtttacgatatttgctgcgtcgtcatttgtatgttacattctctcaa |
4009 |
T |
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| Q |
354 |
tcatcctcaagaaaaccctaatgctctgcccaacctgaaccagctgccgcgcgataactttgatatgtgattttctattt |
433 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
4008 |
tcatcctcaagaaaaccctaatgctctgcccaacctggaccagccgccgcgccataactttgatatgtgattttctattt |
3929 |
T |
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