View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_20 (Length: 432)
Name: NF17897_high_20
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 422
Target Start/End: Complemental strand, 34876956 - 34876541
Alignment:
| Q |
9 |
aatgttagggagacgaacaagagaggagagaatgtttgaattacttccacgattggagacagtacgtaaggtttaagggaagggggtcaattgaaacaaa |
108 |
Q |
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| T |
34876956 |
aatgttagggagacaaacaagaaaagagagaatgtctgaattacttccacgattggagacagtaagtaaggtttaaggaaaggtggtcaattaaaacaaa |
34876857 |
T |
|
| Q |
109 |
aatatggtgattcggtcaaacagaccaacttgattatttaatttgtggatgaaaacaattgattcatttctcctccaaaatttaattagt---gtagctt |
205 |
Q |
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| T |
34876856 |
aatatggtgattcggacaaacagaccaacttgattatttaatttgtggatgaaaacaattgattcatttctcctccaaaatttaattagtgtagtagctt |
34876757 |
T |
|
| Q |
206 |
caaacttcatttaacaattatacaatgaacctgttttccgtcttcctaagggaaaaacatcataatatcgtaaagtgttaatgcaaactgaaactgcaat |
305 |
Q |
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| T |
34876756 |
caaacttcatttaacaattatacaatgaacctgttttccgtcttcctaaggg-aaaacatcataatatcgtaaagtgttaatgcaaactgaaactgcaat |
34876658 |
T |
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| Q |
306 |
ctaacgaggaagtcaatttcacgtataatgtaaattacttcaatnnnnnnnntctaaaatgattttttataactcatcatcatatcatatggaggttttt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34876657 |
ctaacgaggaagtcaatttcacgtataatgtaaattacttcaataaaaaaaatctaaaatgattttttataactcatcatcatatcatatggaggttttt |
34876558 |
T |
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| Q |
406 |
ataaagtttatacgtta |
422 |
Q |
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| T |
34876557 |
ataaagtttatacgtta |
34876541 |
T |
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