View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_28 (Length: 402)
Name: NF17897_high_28
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 4441764 - 4442097
Alignment:
| Q |
1 |
atgaaaactaataaagacccaaccccactgaaatttacaacttaaaaataaacaaaaatactctaaattaacaannnnnnnatttatttagtcatatcaa |
100 |
Q |
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| T |
4441764 |
atgaaaactaataaagacccaaccccactgaaatttacaacttaaaaataaacaaaaatactctaaattaacaatttttttttttatttagtcatatcaa |
4441863 |
T |
|
| Q |
101 |
gaactggtaaatgagtagtatttagaagttagattagatgaagtaacaatcttgagttaaatggcacctctataactatgatatcttttaaattaagcta |
200 |
Q |
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| T |
4441864 |
gaactggtaaatgagtagtatttagaagttagattagatgaagtaacaatcttgagttaaatggcacctctataactatgatatcttttaaattaagcta |
4441963 |
T |
|
| Q |
201 |
atagaaacacatatgcatcaatcttttaagagtttttaacttttccaagaattgaatttaaagtcaaaactatttgttaaattgaaagagactcgagccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441964 |
atagaaacacatatgcatcaatcttttaagagtttttaacttttccaagaattgaatttaaagtcaaaactatttgttaaattgaaagagactcgagccg |
4442063 |
T |
|
| Q |
301 |
ttttatatatttagacgctcttataaaatatcca |
334 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4442064 |
ttttatatatttagacgctcttataaaatatcca |
4442097 |
T |
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