View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_3 (Length: 690)
Name: NF17897_high_3
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 656; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 9 - 672
Target Start/End: Complemental strand, 8571958 - 8571295
Alignment:
| Q |
9 |
agcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8571958 |
agcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtaaaagatcaaat |
8571859 |
T |
|
| Q |
109 |
tggtagtttctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaattcccgttcccttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8571858 |
tggtagtttctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaattcccgttcccttc |
8571759 |
T |
|
| Q |
209 |
gatgatcccgctggtgattacactgtcctcattggagattggtacaagtccaaccacacggtaactaatcatttactatcttcatcatcattttcagacc |
308 |
Q |
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| T |
8571758 |
gatgatcccgctggtgattacactgtcctcattggagattggtacaagtccaaccacacggtaactaatcatttactatcttcatcatcattttcagacc |
8571659 |
T |
|
| Q |
309 |
atgattttcattttcagtaaaattgattgtattgtattatgtgacaggatttgaaggcccaacttgataacggaaagaagttgcctttccctgatggaat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8571658 |
atgattttcattttcagtaaaattgattgtattgtattatgtgacaggatttgaaggcccaacttgataacggaaagaagttgcctttccctgatggaat |
8571559 |
T |
|
| Q |
409 |
tcttatcaatggtcgtgggtctggaggatcatctctcaatgtggagcaaggtactgcattacctacgtgaataagaatcataatgttgttttatctagct |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8571558 |
tcttatcaatggtcgtgggtctggaggatcatctctcaatgtggagcaaggtactgcattacctacgtgaataagaatcataatgttgttttatttagct |
8571459 |
T |
|
| Q |
509 |
ttcctcaacattagtactaaacttgtcataaatgttacaggaaagacttacaggcttagaatatcaaacgtgggattggaaaattcactcaactttcgca |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8571458 |
ttcctcaacattagtactaaacttgtcataaatgttacaggaaagacttacaggcttagaatatcaaacgtgggattggaaaattcactcaactttcgca |
8571359 |
T |
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| Q |
609 |
tacagaaccacaagatgaagctggtagaagtggaaggaacacacaccctccaaaccacctattc |
672 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8571358 |
tacagaaccacaagatgaagctggtagaagtggaaggaacacacaccctccaaaccacctattc |
8571295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 7e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 53754570 - 53754308
Alignment:
| Q |
9 |
agcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaat |
108 |
Q |
| |
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|||||||||||||||||| ||||||||| || | ||||||||||| ||||| ||||| || | |||||||||||| || ||||||||||| |||||||| |
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| T |
53754570 |
agcagagaaggaactcattcgaagatggtgtttcgggaacaacatgccccatcccaccagggaggaacttcacatatattcttcaagtgaaggatcaaat |
53754471 |
T |
|
| Q |
109 |
tggtagtttctattatttcccatctcttgcattccacaaagctgctggtggttttggaggaattagaattctaagtaggccaagaattcccgttcccttc |
208 |
Q |
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||| || || || || || |||||||| ||||| || ||||| ||||||||||||||||| ||||| || || ||||| || |||||||| || || ||| |
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| T |
53754470 |
tggaagcttttactactttccatctctagcatttcaaaaagcagctggtggttttggaggcattaggatactcagtagacctagaattccagtccctttc |
53754371 |
T |
|
| Q |
209 |
gatgatcccgctggtgattacactgtcctcattggagattggtacaagtccaaccacacggta |
271 |
Q |
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||| || ||||| |||||||||||||| ||||| |||||||||||||||||||| |||||| |
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| T |
53754370 |
cctgaaccagctggagattacactgtccttattggtgattggtacaagtccaaccatacggta |
53754308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 545 - 663
Target Start/End: Complemental strand, 53750658 - 53750540
Alignment:
| Q |
545 |
acaggaaagacttacaggcttagaatatcaaacgtgggattggaaaattcactcaactttcgcatacagaaccacaagatgaagctggtagaagtggaag |
644 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||||||| || |||| || |||||||| || || |||||||| ||||| ||||||||||||||| |
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| T |
53750658 |
acaggaaagacttataggcttaggatatcaaacgtgggattgcaacattcccttaactttcgaattcaaaaccacaaattgaagttggtagaagtggaag |
53750559 |
T |
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| Q |
645 |
gaacacacaccctccaaac |
663 |
Q |
| |
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| T |
53750558 |
gaacacacacacttcaaac |
53750540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 28940921 - 28940785
Alignment:
| Q |
30 |
aagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaagtgaaagatcaaattggtagtttctattatttccc |
129 |
Q |
| |
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|||||||||| | ||| |||||||||||||| || ||||| |||||||||||||||| ||||||||| |||||||||||||| || |||| ||||| || |
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| T |
28940921 |
aagatggagtttatggtacaacatgtcccatccctcctgggaagaacttcacatacacacttcaagtcaaagatcaaattggaagcttcttctattttcc |
28940822 |
T |
|
| Q |
130 |
atctcttgcattccacaaagctgctggtggttttgga |
166 |
Q |
| |
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||||||||| || ||||| || ||||||||||||||| |
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| T |
28940821 |
atctcttgcttttcacaaggcagctggtggttttgga |
28940785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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