View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_30 (Length: 389)
Name: NF17897_high_30
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 371
Target Start/End: Original strand, 4194239 - 4194584
Alignment:
| Q |
15 |
aaccaaccatattacaattaatacaattccaatccactccattacatgtcattccaccaatccaaaagcatggatattgtgaatgacgctcaacaagaca |
114 |
Q |
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| T |
4194239 |
aaccaaccatattacaattaatacaattccaatccactc-----------attccaccaatccaaaagcatggatattgtgaatgacgctcaacaagaca |
4194327 |
T |
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| Q |
115 |
ttaatgtattttgttttcccaaacagtgtgatactattttagtcctcaatttcaactagactgaatgtcagaaaatatggtagcagtatctagtattgcg |
214 |
Q |
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| T |
4194328 |
ttaatgtattttgttttcccaaacagtgtgatactattttagtcctcaatttcaactagactgaatgtcagaaaatatggtagcagtatctagtattgcg |
4194427 |
T |
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| Q |
215 |
tataacttggccacatcatctaccaaaaagtttcaacacaggactagttatatagacatacatcacgaaacaaatcacgcaaatagatggaaattatagg |
314 |
Q |
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| T |
4194428 |
tataacttggccacatcatctaccaaaaagtttcaacacaggactagt--tatagacatacatcacgaaacaaatcacgcaaatagatggaaattatagg |
4194525 |
T |
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| Q |
315 |
cgacttatcacagcttccagctcagaaggggtgtaa--atgatacgctggagcaacctt |
371 |
Q |
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| T |
4194526 |
cgacttatcacagcttccagctcagaaaaggtgtaaagatgatatgctggagcaacctt |
4194584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 81 - 225
Target Start/End: Complemental strand, 50772932 - 50772789
Alignment:
| Q |
81 |
agcatggatattgtgaatgacgctcaacaagacattaatgtattttgttttcccaaacagtgtgatactattttagtcctcaatttcaactagactgaat |
180 |
Q |
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| T |
50772932 |
agcatggatcttgtgaatgacgctcgacaagacattaaagtgttt-gttttcccaaacgctgtgatactattttagtcctcaatttcaactagactgaat |
50772834 |
T |
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| Q |
181 |
gtcagaaaatatggtagcagtatctagtattgcgtataacttggc |
225 |
Q |
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| T |
50772833 |
atcagaaaatatggtaggagaatctagtattgcatacaacttggc |
50772789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 260 - 369
Target Start/End: Complemental strand, 50772760 - 50772649
Alignment:
| Q |
260 |
agttatatagacatacatcacgaaacaaatcacgcaaatagatggaaattataggcgacttatcacagcttccagctcagaaggggtgtaa--atgatac |
357 |
Q |
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| T |
50772760 |
agttaaatagacgtacagcacaaatcaaatcatttaaatagatggaaatcataggcgacttatcacagcttccacctcagacggggtataaagatgatac |
50772661 |
T |
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| Q |
358 |
gctggagcaacc |
369 |
Q |
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| T |
50772660 |
gctggagcaacc |
50772649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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