View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_31 (Length: 382)
Name: NF17897_high_31
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 7542562 - 7542215
Alignment:
| Q |
17 |
taggggaagacaatttatcctcagtttgagccttcatccatgttaacatattttgccatcttaatgtcacattacttcccatgtttgaaaacatttcttc |
116 |
Q |
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| T |
7542562 |
taggggaagacaatttatcctcagtttgagccttcatccatgttaacatattttgccatcttaatgtcacattacttcccatgtttgaaaacatttcttc |
7542463 |
T |
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| Q |
117 |
aggtataggtatttcaagaacagtttccaatccatcttctttgtctatgtttggacataacctccttaatgatgattttgcagcaggttgtttcatttga |
216 |
Q |
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| T |
7542462 |
aggtataggtatttcaagaacagtttccaatccatcttctttgtctatgtttggacataacctccttaatgatgattttgcagcaggttgtttcatttga |
7542363 |
T |
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| Q |
217 |
ttagtgtgagattgagacaagtgaagaatttgatgagagaaaattaaggaagagggttatagtcaaaaggctaaatcatctttaattaatgtatgaacat |
316 |
Q |
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| T |
7542362 |
ttagtgtgagattgagacaagtgaagaatttgatgagagaaaattaaggaagagggttatagtcaaaaggctaaatcatctttaattaatgtatgaacat |
7542263 |
T |
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| Q |
317 |
tgagaaggtgatgttaattagaaggttgtccttgtttataggtgttgt |
364 |
Q |
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| T |
7542262 |
tgagaaggtgatgttaattagaaggttgtccttgtttataggtgttgt |
7542215 |
T |
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