View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_32 (Length: 362)
Name: NF17897_high_32
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 17778410 - 17778065
Alignment:
| Q |
1 |
tcgtaatgtgagtgcattgaaaattataactttgctaagataacaataaaatttggattaggttttacttacattagcaggaatggttttctctaagtac |
100 |
Q |
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| T |
17778410 |
tcgtaatgtgagtgcattgaaaattataacttcgctaagataacaataaaatttggattaggttttactcacattagcaggaatggttttctctaagtac |
17778311 |
T |
|
| Q |
101 |
ttctttggtgaaagtggatctatgagagaaggtagcctgaactcatgcatcatccaatcagttttgattcctttagcagctctacctttgtaaaagacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17778310 |
ttctttggtgaaagtggatctatgagagaaggtagcctgaactcatgcatcatccagtcagttttgattcctttagcagctctacctttgtaaaagacta |
17778211 |
T |
|
| Q |
201 |
aggatttctttaggccaatgcacttggaaccttctgaggagtagataggtttatctgtccctgtagctttccagaatccagctccagttaccctgttagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17778210 |
aggatttctttaggccaatgcacttggaaccttctgaggagtagataggtttatctgtccctgtagctttccagaatccagctccagttaccctattagg |
17778111 |
T |
|
| Q |
301 |
ccttgcactgtttctgtattttctgtctcttggacagtagaaatac |
346 |
Q |
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| T |
17778110 |
ccttgcactgtttctgtattttctgtctcttggacagtagaaatac |
17778065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 118 - 346
Target Start/End: Original strand, 24257598 - 24257826
Alignment:
| Q |
118 |
atctatgagagaaggtagcctgaactcatgcatcatccaatcagttttgattcctttagcagctctacctttgtaaaagactaaggatttctttaggcca |
217 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||| || ||||||||||| || | |||| |
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| T |
24257598 |
atctatgagagaaggtagtctaaactcatgcatcatccaatcagttttgactcctttggcagctctacctttgtagaaaactaaggattttttcaagcca |
24257697 |
T |
|
| Q |
218 |
atgcacttggaaccttctgaggagtagataggtttatctgtccctgtagctttccagaatccagctccagttaccctgttaggccttgcactgtttctgt |
317 |
Q |
| |
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|| ||||| ||||| |||||||| || |||||| | ||||| ||||| |||||||| || ||||||| |||||||| ||||| |||||||||||||||| |
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| T |
24257698 |
atacacttagaaccctctgaggaataaataggtctgtctgttcctgttgctttccaaaacccagctcttgttaccctattaggtcttgcactgtttctgt |
24257797 |
T |
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| Q |
318 |
attttctgtctcttggacagtagaaatac |
346 |
Q |
| |
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| T |
24257798 |
actttctgtctcttggacagtaaaaatac |
24257826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 346
Target Start/End: Complemental strand, 3558032 - 3557818
Alignment:
| Q |
129 |
aaggtagcctgaactcatgcatcatccaatcagttttgattcctttagcagctctacctttgtaaaagactaaggatttctttaggccaatgcacttgga |
228 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| || || ||||| | || ||||| | |||||||| || |
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| T |
3558032 |
aaggtagcctaaactcatgcatcatccaatcagttttcatccctttggcagctctacccttatagaagacaagtgacttcttcaaaccaatgcattt--- |
3557936 |
T |
|
| Q |
229 |
accttctgaggagtagataggtttatctgtccctgtagctttccagaatccagctccagttaccctgttaggccttgcactgtttctgtattttctgtct |
328 |
Q |
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|| ||||| ||||| |||||| |||| || || || || ||||| |||||||||| || || || ||||| |||| ||||||||| ||||||||||| |
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| T |
3557935 |
tccatctgatgagtatataggtctatcagttccagttgccttccaaaatccagctcttgtaactctattaggtcttgaactgtttctatattttctgtcc |
3557836 |
T |
|
| Q |
329 |
cttggacagtagaaatac |
346 |
Q |
| |
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|||||||| ||||||||| |
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| T |
3557835 |
cttggacaatagaaatac |
3557818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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