View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17897_high_35 (Length: 341)

Name: NF17897_high_35
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17897_high_35
NF17897_high_35
[»] chr7 (5 HSPs)
chr7 (155-333)||(6241749-6241927)
chr7 (9-58)||(6240795-6240844)
chr7 (77-122)||(6241536-6241581)
chr7 (16-58)||(6211909-6211951)
chr7 (77-122)||(6212609-6212654)
[»] scaffold2079 (1 HSPs)
scaffold2079 (225-333)||(3-111)
[»] chr4 (3 HSPs)
chr4 (225-335)||(32205262-32205372)
chr4 (12-58)||(19115801-19115848)
chr4 (303-335)||(47069815-47069847)
[»] chr3 (1 HSPs)
chr3 (205-335)||(16723845-16723975)
[»] chr5 (1 HSPs)
chr5 (12-58)||(19610145-19610192)
[»] chr2 (3 HSPs)
chr2 (286-335)||(10850960-10851009)
chr2 (266-335)||(32964717-32964786)
chr2 (295-335)||(10878474-10878514)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 155 - 333
Target Start/End: Original strand, 6241749 - 6241927
Alignment:
Q  155 taatattaaagtcattcatttttatttgcaaaatggaattattaaaccgatacttgtgtacctgttctttgtacttttgtgaattgattcgcacaagttc 254  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  6241749 taatgttaaagtcattcatttttatttgcaaaatggaaatattaaaccgatacttgtctaccggttcatggtacttttgtgaattgattcgcacaagttc 6241848  T
Q  255 ccttgtaatttatggaaactgaggaactagacgaaccaatacaagtgggtgaagatcgaagaaagatgaagaagaagtt 333  Q
    ||||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6241849 ccttgtattttatggaaactgaggaactgaacgaaccgatacaagtgggtgaagatcgaagaaagatgaagaagaagtt 6241927  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 6240795 - 6240844
Alignment:
Q  9 gaagaatattagaagcattaatgttacttctaaaaataatcaatcacaat 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6240795 gaagaatattagaagcattaatgttacttctaaaagtaatcaatcacaat 6240844  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 6241536 - 6241581
Alignment:
Q  77 aaaaattagtctctatcacaggcaaaactatcacctaagaaattta 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6241536 aaaaattagtctctatcacaggcaaaactatcacctaagaaattta 6241581  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 6211909 - 6211951
Alignment:
Q  16 attagaagcattaatgttacttctaaaaataatcaatcacaat 58  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6211909 attagaagcattaatgttacttctaaaaataatcaatcacaat 6211951  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 6212609 - 6212654
Alignment:
Q  77 aaaaattagtctctatcacaggcaaaactatcacctaagaaattta 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  6212609 aaaaattagtctttatcacaggcaaaactatcacctaagaaattta 6212654  T

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Target: scaffold2079 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 225 - 333
Target Start/End: Original strand, 3 - 111
Alignment:
Q  225 gtacttttgtgaattgattcgcacaagttcccttgtaatttatggaaactgaggaactagacgaaccaatacaagtgggtgaagatcgaagaaagatgaa 324  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  3 gtacttttgtgaattgattcgcacaagttcccttgtagtttatggaaactgaggaattggacgaaccgatacaagtgggtgaagatcgaagaaagatgaa 102  T
Q  325 gaagaagtt 333  Q
    |||||||||    
T  103 gaagaagtt 111  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 335
Target Start/End: Complemental strand, 32205372 - 32205262
Alignment:
Q  225 gtacttttgtgaattgattcgcacaagttcccttgtaatttatggaaactgaggaactagacgaaccaatacaagtgggtgaagatcgaagaaagatgaa 324  Q
    |||||||||||||||| ||  ||||| | | | || |||| ||  ||||||| |||| ||  ||||||| |||||| |||||||||||||||||||||||    
T  32205372 gtacttttgtgaattggtttacacaaatcctcctgcaattcataaaaactgacgaaccaggtgaaccaaaacaagtaggtgaagatcgaagaaagatgaa 32205273  T
Q  325 gaagaagttga 335  Q
    |||||||||||    
T  32205272 gaagaagttga 32205262  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 19115848 - 19115801
Alignment:
Q  12 gaatattagaagcattaatgttacttctaaaaat-aatcaatcacaat 58  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  19115848 gaatattagaagcattaatgttacttctaaaaatcaatcaatcacaat 19115801  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 47069815 - 47069847
Alignment:
Q  303 gtgaagatcgaagaaagatgaagaagaagttga 335  Q
    |||||||||||||||||| ||||||||||||||    
T  47069815 gtgaagatcgaagaaagaggaagaagaagttga 47069847  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 335
Target Start/End: Original strand, 16723845 - 16723975
Alignment:
Q  205 tacttgtgtacctgttctttgtacttttgtgaattgattcgcacaagttcccttgtaatttatggaaactgaggaactagacgaaccaatacaagtgggt 304  Q
    |||||||||||| |||| | |||||||||||||||| ||||||||| ||||| ||||| | ||||||| |||  |||| ||  || | | ||||||| ||    
T  16723845 tacttgtgtaccggttcgtggtacttttgtgaattggttcgcacaaattcccctgtaactcatggaaattgacaaactggataaatcgagacaagtgagt 16723944  T
Q  305 gaagatcgaagaaagatgaagaagaagttga 335  Q
    ||| || ||||||| |||||||||| |||||    
T  16723945 gaatattgaagaaacatgaagaagaggttga 16723975  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 19610145 - 19610192
Alignment:
Q  12 gaatattagaagcattaatgttacttctaaaaat-aatcaatcacaat 58  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||||||    
T  19610145 gaatattagaaacatcaatgttacttctaaaaataaatcaatcacaat 19610192  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 10851009 - 10850960
Alignment:
Q  286 cgaaccaatacaagtgggtgaagatcgaagaaagatgaagaagaagttga 335  Q
    |||||| | |||||||||||||||| ||||||||| |||||||| |||||    
T  10851009 cgaaccgagacaagtgggtgaagattgaagaaagacgaagaagaggttga 10850960  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 32964786 - 32964717
Alignment:
Q  266 atggaaactgaggaactagacgaaccaatacaagtgggtgaagatcgaagaaagatgaagaagaagttga 335  Q
    ||||||||| | ||||| || ||||| | ||||||| ||||| |||||| |||||||||||||| |||||    
T  32964786 atggaaactaacgaactggatgaaccgagacaagtgagtgaaaatcgaataaagatgaagaagaggttga 32964717  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 10878514 - 10878474
Alignment:
Q  295 acaagtgggtgaagatcgaagaaagatgaagaagaagttga 335  Q
    |||||||||||||||| ||||||||| |||||||| |||||    
T  10878514 acaagtgggtgaagattgaagaaagacgaagaagaggttga 10878474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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