View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17897_high_38 (Length: 332)
Name: NF17897_high_38
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 3 - 316
Target Start/End: Complemental strand, 45795631 - 45795318
Alignment:
| Q |
3 |
caaatagttgtcccataaattatcatgcaaatggtggttcaaataacatacctcatattttatatacaaagaaaagaaaaatgaannnnnnnacaattat |
102 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45795631 |
caaacagttgtcccataaattgttgtgcaaatggttgttcaaataacatacctcatattttatatacaaagaaaagaaaaatgattttttttacaattat |
45795532 |
T |
|
| Q |
103 |
acactaaataaatgaagatttatctatctatctcaaacttaatcttcatctctcagcatggagaaactactaacacgtgaaataaagggcaagtaagggc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45795531 |
acactaaataaatgaagatttatctatctatctcaaacttaatcttcatctctcagcatggagaaactactaacacgtgaaataaagggcaagtaagggc |
45795432 |
T |
|
| Q |
203 |
taaaacaataaatttacccatcatggatcagctcagccaccgtttgtgtcacacaatattaaattaagcctcatttcatcatcatgaatattctccgctc |
302 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45795431 |
taaaacaataaatttagccatcatggatcagctcagccaccgtttgtgtcacacaatattaaattaagcctcatttcatcatcatgaatattctccgctc |
45795332 |
T |
|
| Q |
303 |
aggcatgttgcaac |
316 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45795331 |
aggcatgttgcaac |
45795318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 32752541 - 32752581
Alignment:
| Q |
10 |
ttgtcccataaattatcatgcaaatggtggttcaaataaca |
50 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
32752541 |
ttgtcccataaattatcattgaaatggttgttcaaataaca |
32752581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University