View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_4 (Length: 658)
Name: NF17897_high_4
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 54699199 - 54699542
Alignment:
| Q |
9 |
gagatgaaagctgtattttttctta--gagagttttccaccgtctctataagcattaagcaacgataattgcgacagtgtgcctatttaacttgtattgt |
106 |
Q |
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| T |
54699199 |
gagatgaaagctgtattatttcttatagagagttttccaccgtctctataagcattaagcaacgataattgcgacagtgtgcctatttaacttgtattgt |
54699298 |
T |
|
| Q |
107 |
gatgattctctaatggaagggccacctgggccaccttgtttcaatttcatggtagccatccactggcaccgccgcagctcgttggtccgtcgcatgccac |
206 |
Q |
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| T |
54699299 |
gatgattctctaatggaagggc---------caccttgtttcaatttcatggtagccatccactggcaccaccgcagctcgttggtccgtcgcacgccac |
54699389 |
T |
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| Q |
207 |
caccaactcaacattccttgctgccgcatttgtctggtaagcattggccttcaaggttggcttaaagccgacgttaatttggtttggtttagctcaggct |
306 |
Q |
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| T |
54699390 |
caccaactcaacattccttgctgccgcatttgtctggtaagcattggccttcaaggttggcttaaagccgacgttaatttggtttggtttagctcaggct |
54699489 |
T |
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| Q |
307 |
tctggccagtactgatggctatttttcctgtagtgattgtgatatcttgttat |
359 |
Q |
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| T |
54699490 |
tctggccaatactgatggctatttttcctgtagtgattatgatatcttgttat |
54699542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 358 - 641
Target Start/End: Original strand, 54699650 - 54699935
Alignment:
| Q |
358 |
atagagtgttagatcaatcctattgtcatgatctaaagatatggtcatgatttaattgatctgcgagttagttaatattgataaggt--ttaagaggata |
455 |
Q |
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| T |
54699650 |
atagagtgttagatcaatcctattgtcatgatctaaagatatggtcatgatttaattgatctgcgagttagttaatattgataacgtaattaagaggata |
54699749 |
T |
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| Q |
456 |
ttgcaactag-aaattaaggnnnnnnngttttgctatattattgctttacatataatttccatgtacaagtgtatctatatatctacnnnnnnnntttcc |
554 |
Q |
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| T |
54699750 |
ttgcaactagaaaattaaggaaaaaaagttttgctttattattgctttacatataatttccatgtacaagtgtatctatatatctac-aaaattttctcc |
54699848 |
T |
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| Q |
555 |
caataaaagttcaactaatggttgaggatattaagaagtgagactctaattttaatgagacgcctaaacaaaaactcaagcccttct |
641 |
Q |
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| T |
54699849 |
aaataaaagttcaactaatggttgaggatattaagaagtgagactctaattttaatgagacgcctaaacaaaaactcaagcccttct |
54699935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 570 - 641
Target Start/End: Original strand, 54687919 - 54687990
Alignment:
| Q |
570 |
taatggttgaggatattaagaagtgagactctaattttaatgagacgcctaaacaaaaactcaagcccttct |
641 |
Q |
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| T |
54687919 |
taatggttgagaatattaagaagtgaaactctaattttaatgagacgcctgaatagaaactcaagcccttct |
54687990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 506 - 641
Target Start/End: Original strand, 54692436 - 54692572
Alignment:
| Q |
506 |
tataatttccatgtacaagtgtatctatatatctacnnnnnnnntttcccaataaaagttcaactaatggttgaggatattaagaagtgagactctaatt |
605 |
Q |
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| T |
54692436 |
tataatttccatgtacaagtgtatctatattactacaaaattttgatcaccataaatattcatctaatggttgagactattaagaattgaaactctgatt |
54692535 |
T |
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| Q |
606 |
ttaatgagacgcct-aaacaaaaactcaagcccttct |
641 |
Q |
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| T |
54692536 |
ttaatgagacgcctaaaacagaaactcaagcccttct |
54692572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 503 - 533
Target Start/End: Original strand, 54687852 - 54687882
Alignment:
| Q |
503 |
acatataatttccatgtacaagtgtatctat |
533 |
Q |
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| T |
54687852 |
acatataatttccatgtacaagtgtatctat |
54687882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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