View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_44 (Length: 320)
Name: NF17897_high_44
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 49767972 - 49767677
Alignment:
| Q |
9 |
tagacagtagacattatgtttattgttatattctcagcatatttgtcttgtatcacatttttattcaattcaatcaaatnnnnnnntgaggtgatgagat |
108 |
Q |
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| T |
49767972 |
tagacagtagacattatgtttagtgttatatcctcagcatatttgttttgtatcaaatttttattcaattcaatcaaataataaaatgaggtgatgtgat |
49767873 |
T |
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| Q |
109 |
tgtatgcaccatgtctcagttattttaagtccccttttcccgccacctaacatgccaaatgcacattccactgccaactatataatacgaataannnnnn |
208 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49767872 |
tgtatgcaccatgtctcagttatcgtaagtccccttttcccgccacctaacatgccaaacgcacattccactgccaactatataatacgaataatttttt |
49767773 |
T |
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| Q |
209 |
ngtttcctttataaatgtttgtgtatttttaaagtctttcttcctcaaataattatattggtaccttttcatcaaatggatccatgctacatagtg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49767772 |
tgtttcctttataaatgtttgtgtatttttaaagtctttcttcctcaaataattatattggtaccttttcatcaaatggatccatgctaaatagtg |
49767677 |
T |
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