View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_48 (Length: 307)
Name: NF17897_high_48
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 14108043 - 14107752
Alignment:
| Q |
1 |
aacaaatgatgggtcattgaaagttacgtaacttgttcaacactcataattttaataatatggtaattaaggatggggtttac---actaacttagatta |
97 |
Q |
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| T |
14108043 |
aacaaatgatgggtcattgaaagttacgtaacttgttcaacactcataattttaataatatggtaattaaggatggggtttaccagactaacttagatga |
14107944 |
T |
|
| Q |
98 |
atgttggttcatgttatgtcattttattgccttaatgtttaatataggttttgttttggttctttattgttttggttcagatttgttcagctagttttct |
197 |
Q |
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| T |
14107943 |
atgttggttcatgttatgtcattttattggcttaatgtttaatataggttttgttttggttctttattgttttggttcagatttgttcagctagttttcg |
14107844 |
T |
|
| Q |
198 |
tacagtttggtctcagccacaagtatttgatcggacgacgactcagatgtcttacaacatcctgctgttagagcaggaaaactgcttccatg |
289 |
Q |
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| T |
14107843 |
tacagtttggtctcaaccacaagtatttgatcggacgacgactcagatgtcttacaacatcctgctgttggagcaggaaaactgcttccatg |
14107752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 284
Target Start/End: Complemental strand, 27232346 - 27232251
Alignment:
| Q |
187 |
gctagttttcttacagtttggtctcagccacaagtatttgatcggacgacgactcagatgtcttac-aacatcctgctgttagagcaggaaaactgctt |
284 |
Q |
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|||||||||| |||||||| ||||| |||| ||| |||||||||| ||||||| ||| ||||| |||||| || ||||| |||| ||||||||||| |
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| T |
27232346 |
gctagttttcacacagtttgatctcaaccactagtctttgatcgga---cgactcacatgccttacaaacatcatgttgttacagcaagaaaactgctt |
27232251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 286
Target Start/End: Original strand, 39817893 - 39818005
Alignment:
| Q |
171 |
ggttcagatttgttcagctagttttcttacagtttggtctcagccacaagtatttgatcggacgacgactcagatgtcttacaacatcctgctgttagag |
270 |
Q |
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||||||||||||||| | |||| ||| |||||||| |||||||||| |||||||||| ||||| ||| || |||||| ||| ||||||||| || |
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| T |
39817893 |
ggttcagatttgttctgttagtattcacacagtttgatctcagccacttatatttgatcg---gacgattcacattccttacagcattctgctgttacag |
39817989 |
T |
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| Q |
271 |
caggaaaactgcttcc |
286 |
Q |
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||||||| |||||||| |
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| T |
39817990 |
caggaaatctgcttcc |
39818005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 37753032 - 37752992
Alignment:
| Q |
246 |
gtcttacaacatcctgctgttagagcaggaaaactgcttcc |
286 |
Q |
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| T |
37753032 |
gtcttacaacatcctgctattacagcaggaaatctgcttcc |
37752992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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