View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_49 (Length: 307)
Name: NF17897_high_49
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 29021621 - 29021345
Alignment:
| Q |
19 |
attgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagttactgtcatttcttgtcctagaataagcattgcctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |
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| T |
29021621 |
attgctatatcaacgaccaatcacttttccactttataaacaactgtaagcttctcgaagaagttattgtcattttttgtcctagaataaccattgcctg |
29021522 |
T |
|
| Q |
119 |
cattgcttctgcttaccgcaagagaccaacagtgacggtatcatattccattacctccgatccagacgactatgcaattgcaatgtaagttacttcacat |
218 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29021521 |
cattgcttctgcttaccgcaagagaccaatagtgacggtatcatattccattacctccgaaccagacgactatgcaattgcaatgtaagttacttcacat |
29021422 |
T |
|
| Q |
219 |
ttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgttatatgtatgcctgcttgttttttcctt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29021421 |
ttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgttatatgtatgcctgcttgttttttcctt |
29021345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 27 - 271
Target Start/End: Original strand, 28673513 - 28673751
Alignment:
| Q |
27 |
atcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagttactgtcatttcttgtcctagaataagcattgcctgcattgctt |
126 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||| |||| ||| ||| |||||||||||| |
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| T |
28673513 |
atcaacgaccaatcacttttccatttgataaacaactgtaagcttctcgaagaggttatagtcttttcttgtcatagattaaccatctcctgcattgctt |
28673612 |
T |
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| Q |
127 |
ctgcttaccgcaagagaccaacagtgacggtatcatattccattacctccgatccagacgactatgcaattgcaatgtaagttacttcacatttcattga |
226 |
Q |
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| T |
28673613 |
ctgcttgccgcaagagaccaacattgacggtatcaatttccattacttccgaaccagaggacta------tgcaatgtaagttacttaacatttcattga |
28673706 |
T |
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| Q |
227 |
cttgttggtgagtttcaagggtttaacttgtcttgatttgttata |
271 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28673707 |
tccgttggtgagtttaaagggtttaacttgtcttgatttgttata |
28673751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 28695763 - 28695933
Alignment:
| Q |
27 |
atcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagttactgtcatttcttgtcctagaataagcattgcctgcattgctt |
126 |
Q |
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|
||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||| |||| ||| ||| |||||||||||| |
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| T |
28695763 |
atcaacggccaaccacttttccacttgataaacaactgcaagcttctcgaagaggttatagtcttttcttgtcatagattaaccatctcctgcattgctt |
28695862 |
T |
|
| Q |
127 |
ctgcttaccgcaagagaccaacagtgacggtatcatattccattacctccgatccagacgactatgcaattg |
198 |
Q |
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| T |
28695863 |
ctgcttgccgcaagagaccaacattgacggtgtcaatttccattacttccga-acagacaactatgcaattg |
28695933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 28532626 - 28532571
Alignment:
| Q |
27 |
atcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagt |
82 |
Q |
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|||||| |||||||||||||||||||| | | |||||||||||||||| ||||||| |
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| T |
28532626 |
atcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagt |
28532571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 28532449 - 28532392
Alignment:
| Q |
210 |
acttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
267 |
Q |
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||||||||| | ||||||| |||||||||||||||||||| |||||||||| ||||| |
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|
| T |
28532449 |
acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgt |
28532392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 3438016 - 3438071
Alignment:
| Q |
212 |
ttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
267 |
Q |
| |
|
|||||| ||||||||||||||||||||| | ||||| ||||||||||||||||||| |
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| T |
3438016 |
ttcacacttcattgacttgttggtgagtctgaagggattaacttgtcttgatttgt |
3438071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 532636 - 532587
Alignment:
| Q |
27 |
atcaacgaccaatcacttttccacttgataaacaactgtaagcttctcga |
76 |
Q |
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|||||||||||||| |||||||||||| | || || |||||||||||||| |
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| T |
532636 |
atcaacgaccaatcgcttttccacttgttcaaaaattgtaagcttctcga |
532587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 10615326 - 10615269
Alignment:
| Q |
209 |
tacttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttg |
266 |
Q |
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|||||||||||| ||||||| ||||||||||| ||||| || ||||||||||||||| |
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| T |
10615326 |
tacttcacattttattgactcattggtgagtttgaagggcttgacttgtcttgatttg |
10615269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 18314877 - 18314929
Alignment:
| Q |
27 |
atcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaaga |
79 |
Q |
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|||||||| ||||| |||||||||||| | || |||||||||||||||||||| |
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| T |
18314877 |
atcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaaga |
18314929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 32151788 - 32151732
Alignment:
| Q |
23 |
ctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaaga |
79 |
Q |
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|
|||||| || || ||||| |||||||||||| | |||||||| |||||||||||||| |
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|
| T |
32151788 |
ctatattaaagatcaatcgcttttccacttgttcaacaactggaagcttctcgaaga |
32151732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 6588694 - 6588750
Alignment:
| Q |
211 |
cttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
267 |
Q |
| |
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|||||||||| ||||||| ||||||||||| ||| |||| |||||||||| ||||| |
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| T |
6588694 |
cttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgt |
6588750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 13469924 - 13469968
Alignment:
| Q |
38 |
atcacttttccacttgataaacaactgtaagcttctcgaagaagt |
82 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
13469924 |
atcacttttccacttattccacaactgtaagcttctcgaagaagt |
13469968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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