View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17897_high_5 (Length: 658)
Name: NF17897_high_5
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 264 - 643
Target Start/End: Original strand, 27637431 - 27637810
Alignment:
| Q |
264 |
acaaaataaatgaaacaccatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgatctattgtaataacagttttgaaaa |
363 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | |
|
|
| T |
27637431 |
acaaaataaatgaaacatcatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgagctattgtaataacatttttgacag |
27637530 |
T |
|
| Q |
364 |
taatatcacttttaaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatg |
463 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27637531 |
taatatcaattttaaatcgaattctgaatctcgataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatg |
27637630 |
T |
|
| Q |
464 |
aagagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctct |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27637631 |
aagagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctct |
27637730 |
T |
|
| Q |
564 |
gacttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcttctcctcttccaact |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27637731 |
gacttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcttctcctcttccaact |
27637810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 266 - 643
Target Start/End: Original strand, 37353626 - 37354003
Alignment:
| Q |
266 |
aaaataaatgaaacaccatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgatctattgtaataacagttttgaaaata |
365 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||| ||| |||||| | || |
|
|
| T |
37353626 |
aaaataaaagtaacaacatgaaactaaattaaactcataaatatcatattgataatcatcatagtatagcttagttgttgtaccaacctttttgacagta |
37353725 |
T |
|
| Q |
366 |
atatcacttttaaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaa |
465 |
Q |
| |
|
|||| | | ||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37353726 |
atattaatcttaaatcaaattttgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaa |
37353825 |
T |
|
| Q |
466 |
gagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctga |
565 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| | |
|
|
| T |
37353826 |
gagagatgcctacatggaagaactaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctctta |
37353925 |
T |
|
| Q |
566 |
cttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcttctcctcttccaact |
643 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
37353926 |
cttcttccttttctccacaacttgattccgcatcattttccaccaacatcgttactctctccttctcctcttccaact |
37354003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 266 - 643
Target Start/End: Original strand, 37365600 - 37365977
Alignment:
| Q |
266 |
aaaataaatgaaacaccatgaaactaaattaaactcataaatatcatattgataatcatcatagcatagatgatctattgtaataacagttttgaaaata |
365 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||| ||| |||||| | || |
|
|
| T |
37365600 |
aaaataaaagtaacaacatgaaactaaattaaactcataaatatcatattgataatcatcatagtatagcttagttgttgtaccaacctttttgacagta |
37365699 |
T |
|
| Q |
366 |
atatcacttttaaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaa |
465 |
Q |
| |
|
|||| | | ||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37365700 |
atattaatcttaaatcaaattttgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaa |
37365799 |
T |
|
| Q |
466 |
gagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctga |
565 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| | |
|
|
| T |
37365800 |
gagagatgcctacatggaagaactaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctctta |
37365899 |
T |
|
| Q |
566 |
cttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcttctcctcttccaact |
643 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
37365900 |
cttcttccttttctccacaacttgattccgcatcattttccaccaacatcgttactctctccttctcctcttccaact |
37365977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 377 - 643
Target Start/End: Complemental strand, 12292680 - 12292411
Alignment:
| Q |
377 |
aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct |
476 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||||||| |||||||| | || ||||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
12292680 |
aaatcaaattctgaatctcaataacacccttctttttcattccacacattggacaggcttcgagtaaagcttcacatgctttgcatgaagaaagatgcct |
12292581 |
T |
|
| Q |
477 |
acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaaca---cattgttttcacgtcttacacgcttttcagctctgacttcttcc |
573 |
Q |
| |
|
|||||| | |||||||||| | | |||||| |||||||||| |||||||| ||||||| ||||||| |||||||||||| | |||||||| |
|
|
| T |
12292580 |
acatggtataaataagacatctgaggagtttgtgttacactttggacaaaacatagtattgtttccacgtctgacacgcttttcaagaattacttcttcg |
12292481 |
T |
|
| Q |
574 |
ttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcttctcctcttccaact |
643 |
Q |
| |
|
|||||||| | ||||| || |||||||| || |||||||||| | ||||||||||||||||||||| |
|
|
| T |
12292480 |
ctttcaccagtgcatgattttgcatcattttctacaaacatccttagtttcttcttctcctcttccaact |
12292411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 388 - 640
Target Start/End: Complemental strand, 12242929 - 12242674
Alignment:
| Q |
388 |
tgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaa |
487 |
Q |
| |
|
||||| ||||||| ||| |||||| |||||||||| |||||||||| || |||| |||| | ||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
12242929 |
tgaatttcaataacaccattcttttccattccacagattggacaagctttgagtgaagcttcacacgctttgcatgaagaaagatgtctacatggcagaa |
12242830 |
T |
|
| Q |
488 |
ataagacaccaagagtgtttgtcttacactttgaacaaaac---acattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccaca |
584 |
Q |
| |
|
|||||||| | || | |||| ||||| |||| ||||||| | ||||||| ||||||| ||||| |||||| ||| || || || |||||||| || |
|
|
| T |
12242829 |
ataagacatccgaagagcttgtgttacattttggacaaaacataatattgtttccacgtctaacacgtttttcaattcttacatcatcattttcaccgca |
12242730 |
T |
|
| Q |
585 |
acttgattccgcgtcattttccaccaacatccttactctcttcttctcctcttcca |
640 |
Q |
| |
|
|| ||| | || |||||||||| |||| ||||| | | |||||||||||||||| |
|
|
| T |
12242729 |
acatgagtttgcatcattttccataaacacccttagttttttcttctcctcttcca |
12242674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 27514346 - 27514589
Alignment:
| Q |
10 |
catcatcacctctgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacatggcgagcaatgtatggt-acatgcatgttttacaaca |
108 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
27514346 |
catcatgacccctgagcataaacaacgtgatgcagcaggtttgaaatttccattctccaacatggcgagcaatgtatggttacatgcaagttttacaaca |
27514445 |
T |
|
| Q |
109 |
taagggtatcaacgtaattttgtcccaaaaattcataaataaattttttcccgcccggtgaactgcagttcaaaatgatggattttcaaaggattaaatt |
208 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| ||| || ||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27514446 |
taagggtataaacgtaattttgtcccaaaaactcattaattaaatttttcccgcccgattaactgcagttgaaaatgatggattttcaaaggattaaatt |
27514545 |
T |
|
| Q |
209 |
agggcaaacttgcaggtttgtgttccatttataatattatgata |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27514546 |
agggcaaacttgcaggtttgtgttccatttataatattatgata |
27514589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 6e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 39209531 - 39209354
Alignment:
| Q |
10 |
catcatcacctctgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacatggcgagcaatgtatggtacatgcatgttttacaacat |
109 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39209531 |
catcatcacctatgagcataaacaacgtgatgcaccaggtttgaaatttccatcctccaacattgcgagcaatgtatggtacatgcatgttttacaacat |
39209432 |
T |
|
| Q |
110 |
aagggtatcaacgtaattttgtcccaaaaattcataaataaattttttcccgcccggtgaactgcagttcaaaatgat |
187 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
39209431 |
aagggtaccaacgtaattttgtcccaaaaattcataaattaaatttttcccgcccggcgaactgcagttaaaaatgat |
39209354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 377 - 643
Target Start/End: Original strand, 34697785 - 34698054
Alignment:
| Q |
377 |
aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct |
476 |
Q |
| |
|
|||| ||| |||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||| |||| |||||||| |
|
|
| T |
34697785 |
aaattgaactctggatctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcct |
34697884 |
T |
|
| Q |
477 |
acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttcc |
573 |
Q |
| |
|
|||||| |||||||||||||||| | |||||||||||||||||||||||| || ||||| || | ||| | |||||||||||||| ||||||| |
|
|
| T |
34697885 |
acatggaagaaataagacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttca |
34697984 |
T |
|
| Q |
574 |
ttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcttctcctcttccaact |
643 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||| | ||||||| ||||||||||||| |||||||||| |
|
|
| T |
34697985 |
ctttcaccgcaacatgattccgcgtcatttagcacaaccatccttgctctcttcttctcttcttccaact |
34698054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 377 - 643
Target Start/End: Original strand, 34720197 - 34720466
Alignment:
| Q |
377 |
aaatcgaattctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct |
476 |
Q |
| |
|
|||| ||| |||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||| |||| |||||||| |
|
|
| T |
34720197 |
aaattgaactctggatctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcct |
34720296 |
T |
|
| Q |
477 |
acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttcc |
573 |
Q |
| |
|
|||||| |||||||||||||||| | |||||||||||||||||||||||| || ||||| || | ||| | |||||||||||||| ||||||| |
|
|
| T |
34720297 |
acatggaagaaataagacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttca |
34720396 |
T |
|
| Q |
574 |
ttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcttctcctcttccaact |
643 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||| | ||||||| ||||||||||||| |||||||||| |
|
|
| T |
34720397 |
ctttcaccgcaacatgattccgcgtcatttagcacaaccatccttgctctcttcttctcttcttccaact |
34720466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 386 - 467
Target Start/End: Original strand, 27909926 - 27910007
Alignment:
| Q |
386 |
tctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaaga |
467 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||||| ||||||||| || ||||||||| | ||| ||||||||||||| |
|
|
| T |
27909926 |
tctgaatctcaataacatccttcttttccattccacatattggacaaacttcgagtaaagcttcacacactttgcatgaaga |
27910007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 643
Target Start/End: Original strand, 27911700 - 27911874
Alignment:
| Q |
472 |
tgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaac---acattgttttcacgtcttacacgcttttcagctctgactt |
568 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| ||||||||| ||||||| | ||||||| ||| ||| |||| |||||||| ||| |||| |
|
|
| T |
27911700 |
tgcctacatggcagaaataagacacctgaggagtttgtgttacactttagacaaaacataatattgtttccacatctgacacacttttcaggtcttactt |
27911799 |
T |
|
| Q |
569 |
cttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcttctcctcttccaact |
643 |
Q |
| |
|
| || ||||| | |||| ||||| | |||||||| || ||||| || | ||||||||||||||||||||| |
|
|
| T |
27911800 |
cctcgctttcatcgcaacatgattttgtatcattttctacgaacatatttgatttcttcttctcctcttccaact |
27911874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 23017092 - 23016965
Alignment:
| Q |
108 |
ataagggtatcaacgtaattttgtcccaaaaattcataaataaattttttcccgcccggtgaactgcagttcaaaatgatggattttcaaaggattaaat |
207 |
Q |
| |
|
|||||||||| || |||||||||||||||||| |||| ||| || ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23017092 |
ataagggtataaatgtaattttgtcccaaaaactcattaattaaatttttcccgcccgatgaactgcagttgaaaatgatggattttcaaaggattaaat |
23016993 |
T |
|
| Q |
208 |
tagggcaaacttgcaggtttgtgttcca |
235 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
23016992 |
tagggaaaacttgcaggtttgtgttcca |
23016965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 36407015 - 36407074
Alignment:
| Q |
192 |
tttcaaaggattaaattagggcaaacttgcaggtttgtgttccatttataatattatgat |
251 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
36407015 |
tttcaaaggaacaaattagggcaaatttgcagcttggtgttccatttataatattatgat |
36407074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 18449208 - 18449260
Alignment:
| Q |
192 |
tttcaaaggattaaattagggcaaacttgcaggtttgtgttccatttataata |
244 |
Q |
| |
|
|||||||||| ||||||||||||| ||| || || ||||||||||||||||| |
|
|
| T |
18449208 |
tttcaaaggagcaaattagggcaaatttggagcttggtgttccatttataata |
18449260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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