View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_51 (Length: 302)
Name: NF17897_high_51
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 27443416 - 27443128
Alignment:
| Q |
1 |
aatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatatataccatagaaaaggaatgcaaaactaaggca |
100 |
Q |
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| T |
27443416 |
aatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatatataccatagaagaggaatgcaaaactaaggca |
27443317 |
T |
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| Q |
101 |
tagagcaacacgagtgcttggcattttggatatggcttgattaatcttgttttgcaggcttgtgaatattttctctttcgattgtagtttgctgtttgaa |
200 |
Q |
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| T |
27443316 |
tagagcaacacgagtgcttgtcattttggatatggcttgatgaatcttgttttgcaggcttgtgaatattttctctttcgattgtagtttgctgtttgaa |
27443217 |
T |
|
| Q |
201 |
ggttattgatgaagttgttctctgcttcatgacat--atatatagccttcttttatcgatggtttgaatcttaattcaacgaatggtat |
287 |
Q |
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| T |
27443216 |
ggtgattgatgaagttgttctctgcttcatgacataaatatatagccttcttctatcgatggtttgaatcttaattcaacgaatggtat |
27443128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 27221424 - 27221707
Alignment:
| Q |
1 |
aatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatat----ataccatagaaaaggaatgcaaaactaa |
96 |
Q |
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|||| |||||||||| ||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||||||||| |||||||||||||||| |
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| T |
27221424 |
aattaacttagctaagtgaattgattaattatatggaa---aattaatgtagttatgtattgatatatgtacgtaccatagaagaggaatgcaaaactaa |
27221520 |
T |
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| Q |
97 |
ggcatagagcaacacgagtgcttggcattttggatatggc--ttgattaatcttgttttgcaggcttgtgaatattttctctttcgattgtagtttgctg |
194 |
Q |
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| T |
27221521 |
ggcatagagcaacgcgggtgcttgtcattttggatatggcttttgatgaatcttgttttgcaggcttgtgaatattttctctttcgattgtagtttgctg |
27221620 |
T |
|
| Q |
195 |
tttgaaggttattgatgaagttgttctctgcttcatgacatatatatagccttcttttatcgatggtttgaatcttaattcaacgaatg |
283 |
Q |
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|||| | || |||||||||||||||||||||||| |||||||||||||| |||| | |||||| ||||||| |||||||||||||| |
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| T |
27221621 |
tttgtaagtgattgatgaagttgttctctgcttcgtgacatatatatagatttctat--ccgatgggttgaatcgtaattcaacgaatg |
27221707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 27215462 - 27215758
Alignment:
| Q |
1 |
aatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatat----ataccatagaaaaggaatgcaaaactaa |
96 |
Q |
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|||| |||||||||| ||||||||||||| |||||||| ||||||||||||| ||| |||||||| |||| ||||| |||||||||||||||| |
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| T |
27215462 |
aattaacttagctaagtgaattgattaattatatggaa---aattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgcaaaactaa |
27215558 |
T |
|
| Q |
97 |
ggcatagagcaacacgagtgcttggcattttggatatggc--ttgattaatcttgttttgcaggcttgtgaatattt-------------tctctttcga |
181 |
Q |
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|||| ||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||| |
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| T |
27215559 |
ggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatatatattaattagtgagagtttttcga |
27215658 |
T |
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| Q |
182 |
ttgtagtttgctgtttgaaggtta-ttgatgaagttgttctctgcttcatgacatatatatagccttcttttatcgatggtttgaatcttaattcaacga |
280 |
Q |
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|||||||||| ||| ||||||| | |||||||||||| |||||||||| | |||||||||||| ||| ||||||||||||||||| | ||||||||| |
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| T |
27215659 |
ttgtagtttgttgtgtgaaggtgatttgatgaagttgctctctgcttctttacatatatatagatttc---tatcgatggtttgaatcgtcattcaacga |
27215755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 54 - 291
Target Start/End: Original strand, 27433251 - 27433495
Alignment:
| Q |
54 |
tgagtagtgatatatat-accatagaaaaggaatgcaaaactaaggcatagagcaacacgagtgcttggcattttggatatggcttgattaatcttgttt |
152 |
Q |
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|||||| |||||||||| ||||||||| |||||||| || |||| ||||| ||||||| | ||| | ||||||||||||| ||||||||||||||||| |
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| T |
27433251 |
tgagtactgatatatattaccatagaagaggaatgccaagctaaagcataaagcaacatgggtgttcttcattttggatatgacttgattaatcttgttt |
27433350 |
T |
|
| Q |
153 |
tgcaggcttgtgaatatt-----------ttctctttcgattgtagtttg-ctgtttgaaggttattgatgaagttgttctctgcttcatgacatatata |
240 |
Q |
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|||||||||||||||||| ||||||||| |||||||||| ||||||| || ||||||||| ||| |||||||||| ||||||||||| |
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| T |
27433351 |
tgcaggcttgtgaatattggtgcaatattttctctttcaattgtagtttttctgtttg---gtgattgatgaaattgctctctgcttcttgacatatata |
27433447 |
T |
|
| Q |
241 |
tagccttcttttatcgatggtttgaatcttaattcaacgaatggtattcat |
291 |
Q |
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|||||| || || |||||||||||||||||||||||||||||||||||| |
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| T |
27433448 |
tagcctact---atggatggtttgaatcttaattcaacgaatggtattcat |
27433495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 27208155 - 27208225
Alignment:
| Q |
42 |
aattaatgtagttgagtagtgatatatataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
112 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||| ||||||||| |
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| T |
27208155 |
aattaatgtagttgagtactgatatatataccatagaagaggaatgcaaagctaaagcataaagcaacacg |
27208225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 27208270 - 27208343
Alignment:
| Q |
169 |
ttttctctttcgattgtagtttgctgtttgaaggttattgatgaagttgttctctgcttcatgacatatatata |
242 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||| ||||| |||| ||||||||||||| |
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| T |
27208270 |
ttttctctttcgattgtagtttgctgtttgaaagtgattgatgaagtttctctcttcttcttgacatatatata |
27208343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 27390259 - 27390304
Alignment:
| Q |
67 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
112 |
Q |
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| T |
27390259 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27390304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 27410494 - 27410539
Alignment:
| Q |
67 |
atataccatagaaaaggaatgcaaaactaaggcatagagcaacacg |
112 |
Q |
| |
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||||||||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
27410494 |
atataccatagaagaggaatgcaaagctaaggcagagagcaacacg |
27410539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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