View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_58 (Length: 279)
Name: NF17897_high_58
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_58 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 4278843 - 4279106
Alignment:
| Q |
9 |
taggttcaaatctcgcactactcattaaaatttgattttcatttttatatttataagccttgttgttaatactttttaaagagtgcattcgagatattct |
108 |
Q |
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| T |
4278843 |
taggttcaaatctcgcactactcattaaaatttgattttcatttttatatttataagccttgttgttaatactttttaaaaagcgcattcgagatattct |
4278942 |
T |
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| Q |
109 |
ttaaacattataaataagtaatta-ttcataaaaatgataaagttttcaattttcaatacaccattaaacaaactttcacaaaaaagtaccatctaaaat |
207 |
Q |
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| T |
4278943 |
ttaaacattataaataagtaattattttataaaaatgataaagttttcaatttccaatacaccattacacaaactttcaccaaaaagtaccatctaaaat |
4279042 |
T |
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| Q |
208 |
ccttacctagtgccccgtgaaactagttaacatttctcttttttaaatacgtcactgtagaatt |
271 |
Q |
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| T |
4279043 |
ccttacctagtgcccagtgaaactagttaacatttttcttttttaaatatgtcactatagaatt |
4279106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 248
Target Start/End: Original strand, 4040886 - 4041036
Alignment:
| Q |
101 |
gatattctttaaacattataaat-aagtaattatt-cataaaaatgataaagttttcaattttcaatacacc-attaaacaaactttcacaaaaaagtac |
197 |
Q |
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| T |
4040886 |
gatactctttaagcattttaaattaagtaattattacataaaagtgtcaaagttttcaattttcaatatacttattacacaaactttcacaaaaagttat |
4040985 |
T |
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| Q |
198 |
catctaaaatccttacctagtgccccgtgaaactagttaacatttctcttt |
248 |
Q |
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| T |
4040986 |
catttaaagtccttaactagtgtcccgaggcactcgttaacatttcccttt |
4041036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 48976 - 48905
Alignment:
| Q |
123 |
taagtaattattcat-aaaaatgataaagttttcaattttcaatacacc-attaaacaaactttcacaaaaa |
192 |
Q |
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| T |
48976 |
taagtaattattcttgaaaaatgtaaaagttttcaattttcaatgcaccgattacacaaactttcataaaaa |
48905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 37359482 - 37359525
Alignment:
| Q |
123 |
taagtaattattc-ataaaaatgataaagttttcaattttcaat |
165 |
Q |
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| T |
37359482 |
taagtaattattccataaaaatgttaaagttttcaattttcaat |
37359525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 37461538 - 37461440
Alignment:
| Q |
147 |
aaagttttcaattttcaatacacc-attaaacaaactttca-caaaaaagtaccatctaaaatccttacctagtgccccgtgaaactagttaacatttc |
243 |
Q |
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| T |
37461538 |
aaagttttcaatttttaatgcaccgattacacaaactttcataaaaaaattaccatttataatccttaactaatgccccgatgcactagttaacatttc |
37461440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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