View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17897_high_6 (Length: 597)
Name: NF17897_high_6
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 20 - 480
Target Start/End: Original strand, 32102500 - 32102960
Alignment:
| Q |
20 |
ctagctagataagaaataatggaagaaggtgagttactttacttaccctacaccaggaggaaaagagaaagagacacacatcaaatagaaccattcagat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32102500 |
ctagctagataagaaataatggaagaaggtgagttactttacttaccctacaccaggaggaaaagagaaagagacacacatcaaatagaaccattcagat |
32102599 |
T |
|
| Q |
120 |
tctgttaggtcctcaggtgacaaggaagcacatggacgacgagttggtggattagtctctccggcagacaatgattcatagagttctcttagttgctggc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32102600 |
tctgttaggtcctcaggtgacaaggaagcacatggacgacgagttggtggatttgtctctccggcagacaatgattcatagagttctcttagttgctggc |
32102699 |
T |
|
| Q |
220 |
ttctttgtagagatgcttcctcagcactaacctccattggttgcactgtctttcgagtcttaattgatccattgtaatatccatcaccccatactagaat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32102700 |
ttctttgtagagatgcttcctcagcactaacctccattggttgcactgtctttcgagtcttaattgatccattgtaatatccatcaccccatactagaat |
32102799 |
T |
|
| Q |
320 |
cctgtatatcaaatcattgtgttagagaaaattataaaattctttatcacataagctattactagtaaaagtgaatatgttcgagaagtgtgagttcagt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32102800 |
cctgtatatcaaatcattgtgttagagaaaattataaaattctttatcacataagctattactagtcaaagtgaatatgttcgagaagtgtgagttcagt |
32102899 |
T |
|
| Q |
420 |
aagagtttgaccttataactttaacagaaggaggtcaaatgtctttaagaatgactgtaaa |
480 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32102900 |
aagagtttcaccttgtaactttaatagaaggaggtctaatgtctttaagaatgactgtaaa |
32102960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 529 - 591
Target Start/End: Original strand, 32102991 - 32103051
Alignment:
| Q |
529 |
cgattaataaaatatatacataaacccagagaagttgacacgaactgtttttattttcttgga |
591 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
32102991 |
cgattaataaaatat--acataaacccagagaagttgaatcgaactgtttttatttttttgga |
32103051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University