View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_60 (Length: 275)
Name: NF17897_high_60
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_60 |
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Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 29021346 - 29021250
Alignment:
| Q |
91 |
ttaacgtactgtttaattaattttgcctctcgtcgagaacaagatgaatcaaatgattaaatctatttgcaaccttaatagtactgaacgcacatta |
187 |
Q |
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| T |
29021346 |
ttaacttactgtttaattaattttgcctttggtcaagaacaagatgaaccaaatgattaaatctatttgcaaccttaatagtattgaacgcacatta |
29021250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 33 - 187
Target Start/End: Original strand, 28695980 - 28696130
Alignment:
| Q |
33 |
tttgtagttattttatttcttgaagctatggactaactgttgtttcttttcttcttctttaacgtactgtttaattaattttgcctctcgtcgagaacaa |
132 |
Q |
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| T |
28695980 |
tttgtggttgttttatttcttgaagctatggactaactgttgtttcctttcttcat---taaattagtgtttaattaatttt-cctttggtcaa-aacaa |
28696074 |
T |
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| Q |
133 |
gatgaatcaaatgattaaatctatttgcaaccttaat-agtactgaacgcacatta |
187 |
Q |
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| T |
28696075 |
gatgaatgaaatcattaaatctatttgcaaccttaatcagtattgaatgcacatta |
28696130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 187
Target Start/End: Original strand, 28673765 - 28673915
Alignment:
| Q |
33 |
tttgtagttattttatttcttgaagctatggactaactgttgtttcttttcttcttctttaacgtactgtttaattaattttgcctctcgtcgagaacaa |
132 |
Q |
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| T |
28673765 |
tttgtggttgttttatttcttgaagctatggactaacagttgtttcctttcttcat---taaattagtgtttaattaatttt-cctttggtcaa-aacaa |
28673859 |
T |
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| Q |
133 |
gatgaatcaaatgattaaatctatttgcaaccttaat-agtactgaacgcacatta |
187 |
Q |
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| T |
28673860 |
gatgaatgaaatcattaaatctatttgcaaccttaatcagtattgaatgcacatta |
28673915 |
T |
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