View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_69 (Length: 249)
Name: NF17897_high_69
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_69 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 5480597 - 5480433
Alignment:
| Q |
44 |
atgttagtattatcaagttattccagcatcaaattaatcaaatggattaacaaatatcttaccaagataaagaaaaacatagcaatttcttataattctc |
143 |
Q |
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| T |
5480597 |
atgttagtattatcgagttattcttgcaccaaattaatcaaatggattaacaaatatcttaccaagataaa-aaaaacatagcaatttcttataaatctc |
5480499 |
T |
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| Q |
144 |
agagacagaagtaatttaattcctgtacaagttacattacaacctcaaacacaaacttataaaaca |
209 |
Q |
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| T |
5480498 |
agagacagaagtaatttaattcctgtacaagttacattacaacctcaaacacaaacttataaaaca |
5480433 |
T |
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