View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_71 (Length: 240)
Name: NF17897_high_71
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_71 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 91 - 226
Target Start/End: Complemental strand, 34573320 - 34573185
Alignment:
| Q |
91 |
gtagtgtttcaatagcatacaccttgatctatatgcagagtaatacttgctaattagcgtaacataatgtgtccaaatcttgagtttgttataaaataga |
190 |
Q |
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| T |
34573320 |
gtagtgtttcaatagcatacaacttgaactatatgcagagtaatacttgctaattagcgtaacataatgtgtccaaatcttgagtttgttataaaataga |
34573221 |
T |
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| Q |
191 |
tttttcagaattagttgaatattgtttaaggtagtt |
226 |
Q |
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| T |
34573220 |
tttttcagaattagttgaatattgtttaaggtagtt |
34573185 |
T |
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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34573419 - 34573343
Alignment:
| Q |
1 |
attattttccctattataaattgtagaatgatgaaactttgctagatagcattatttcaacgttgagtggctcctag |
77 |
Q |
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| T |
34573419 |
attattttccctattataaattgtagaatgatgaaactttgctagatagcattatttcaacgttgagtggctcctag |
34573343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 2622032 - 2622061
Alignment:
| Q |
197 |
agaattagttgaatattgtttaaggtagtt |
226 |
Q |
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| T |
2622032 |
agaattagttgaatattgtttaaggtagtt |
2622061 |
T |
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