View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_79 (Length: 225)
Name: NF17897_high_79
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_79 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 3025215 - 3025410
Alignment:
| Q |
11 |
gattatacttgcagggaatttcgagattagtaatatggtgaggaaggtcagctgcattgtcaaataagagaaaattgaatgttattgaaaggtgataaaa |
110 |
Q |
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| T |
3025215 |
gattatacttgcagggaatttcatgattagtaatatggtgaggagggtcaactgcattgtcaaataagagaaaattgaatgttattgaaaggtgataaaa |
3025314 |
T |
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| Q |
111 |
cattgtgaataagataaattatnnnnnnntttaaaggttgtgtaaaatgacatacttgtattgattataacataaaatgatgagagaaagatgatca |
207 |
Q |
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| T |
3025315 |
cattgtgaataagataaattat-aaaaaatttaaaggttgtgtaaaatgacatacttgtattgattataacataaaatgatgagagaaagatgatca |
3025410 |
T |
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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 207
Target Start/End: Complemental strand, 19314768 - 19314615
Alignment:
| Q |
52 |
ggaaggtcagctgcattgtcaaataagagaaaattgaatgttattgaaaggtgataaaacattgtgaataagataaattatnnnnnnntttaaaggttgt |
151 |
Q |
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| T |
19314768 |
ggaatgtcacctgcattgttaaataaggaaaaattggatgttattgaagggtgataaa-cattgtgtataaaatcaattataaattt-tttaaaggttat |
19314671 |
T |
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| Q |
152 |
gtaaaatgacatacttgtattgattataacataaaatgatgagagaaagatgatca |
207 |
Q |
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| T |
19314670 |
gtaaattgacatacttgtattgattacaacaaaaaattgagagagaaagatgatca |
19314615 |
T |
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