View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17897_high_80 (Length: 224)
Name: NF17897_high_80
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_80 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 15424380 - 15424568
Alignment:
| Q |
18 |
ataactagccattctcctgcgtacattccttagcataagaaactaaatttatgttattatttcaaagtgcacagttgatgtgctaactgactgaaactgt |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15424380 |
ataactagccattctcctgcgcacattccttagcataagaaactaaatttatgttattatttcaaagtgcacagttgatgtgctaactgactgaaactct |
15424479 |
T |
|
| Q |
118 |
tgcgatctgaatcgtcgttgattactgataannnnnnncataacaataagtacaaattttagcatttagtggccgaatgtttaatctctg |
207 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15424480 |
tgcgatctaaatcgt-gttgattactgatcgtttttttcataacaataagtacaaattttagcatttagtggccgaatgtttaatctctg |
15424568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University