View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_86 (Length: 210)
Name: NF17897_high_86
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_86 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 6591922 - 6592060
Alignment:
| Q |
54 |
attgtttttaatacttatacttacagaaaaacagtttcgaatcagatgagcattataccttcaaaaaatagttctgaatctccaggctgtgtatatgagg |
153 |
Q |
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| T |
6591922 |
attgtttttaatacttatacttacagaaaaacagtttcgaatcagatgagcattataccttcaaaaaatagttctgaatctccaggctgcgtatatgagg |
6592021 |
T |
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| Q |
154 |
tagatgaataaaaaattcaaccaaattgctagagcgttc |
192 |
Q |
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| T |
6592022 |
tagatgaataaaaaattcaaccaaattgctagagcgttc |
6592060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 6601223 - 6601313
Alignment:
| Q |
100 |
tgagcattataccttcaaaaaatagttctgaatctccaggctgtgtatatgaggtagatgaataaaaaattcaaccaaattgctagagcgt |
190 |
Q |
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| T |
6601223 |
tgagcattataccttcaaaaaatagctttgaatctccagcctttgtatacgaggcaaatgaattaaaaattcgaccagattgctagtgcgt |
6601313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 3362292 - 3362205
Alignment:
| Q |
101 |
gagcattataccttcaaaaaatagttctgaatctccaggctgtgtatatgaggtagatgaataaaaaattcaaccaaattgctagagc |
188 |
Q |
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| T |
3362292 |
gagcattatacctctaaaaaatagtgatgaatctctaggctttgtatgtgaggtagatgaacgaaaaatcgaagcaaattgctagagc |
3362205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 6591841 - 6591876
Alignment:
| Q |
10 |
ggagcagagacaagacagaaagtgaatggattacat |
45 |
Q |
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| T |
6591841 |
ggagcagaaacaagacagaaagtgaatggattacat |
6591876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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