View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_high_87 (Length: 210)
Name: NF17897_high_87
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_high_87 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 53118325 - 53118152
Alignment:
| Q |
18 |
ttctcagcaattcaatttttataacaagttatttattataagggtctgccttatatatcctaaacatataggataccggtcaggtttggtgggggtnnnn |
117 |
Q |
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| T |
53118325 |
ttctcagcaattcaatttttataacaagttatttgttataagggtctgccttatatatcctaaacatataggatactggtcaggtttggtgggggtaaaa |
53118226 |
T |
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| Q |
118 |
nnntaattaaaggataaagactcacgaggttattatgatttaacaagaaggaaatcatacacaagtgcactttg |
191 |
Q |
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| T |
53118225 |
atataattaaaggataaagactcacgaggttattatgatttaacaagaaggaaatcatacacaactgcactttg |
53118152 |
T |
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