View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17897_low_10 (Length: 576)
Name: NF17897_low_10
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 16 - 562
Target Start/End: Original strand, 38568123 - 38568669
Alignment:
| Q |
16 |
acaacaagaagtggaagtgttgacatcaatacaacagtaagaagccatcctctgctaaatgctatcacaaaaccgccaacaaatgttgctattagctgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568123 |
acaacaagaagtggaagtgttgacatcaatacaacagtaagaagccatcctctggtaaatgctatcacaaaaccgccaacaaatgttgctattagctgca |
38568222 |
T |
|
| Q |
116 |
gaaatttcccaacctgttttttcaaacataaaatgaaaccttcattcagaaaaataaattcaaagctatgtagtagacacttcacattaaatttgtgtcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568223 |
gaaatttcccaacctgttttttcaaacataaaatgaaaccttcattcagaaaaataaattcaaagctatgtagtagacacttcacattaaatttgtgtcc |
38568322 |
T |
|
| Q |
216 |
ggtgtccaaacgacactaatatgcgattacattcaattattctatttttcaaattactactagtattgacgtactgtgtttggtgtccgtgctcgtggtt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568323 |
ggtgtccaaacgacactaatatgcgattacattcaattattctatttttcaaattactactagtattgacgtactgtgtttggtgtccgtgctcgtggtt |
38568422 |
T |
|
| Q |
316 |
catagattcaaagtaaccatttactccaaaatcatattttacattcaactctaaaattcataccttctcacccatggcatcttgaataagaacagtatca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568423 |
catagattcaaagtaaccatttactccaaaatcatattttacattcaactctaaaattcataccttctcacccatggcatcttgaataagaacagtatca |
38568522 |
T |
|
| Q |
416 |
ccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaatacaatcctcttattcttg |
515 |
Q |
| |
|
|| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568523 |
cctgacattctccctataacttctcctgtgtttgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaatacaatcctcttattcttg |
38568622 |
T |
|
| Q |
516 |
cagcttgtctttctcctgtaaccatccaacaactcacctctgaaaat |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568623 |
cagcttgtctttctcctgtaaccatccaacaactcacctctgaaaat |
38568669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 372 - 562
Target Start/End: Original strand, 38527178 - 38527368
Alignment:
| Q |
372 |
ttcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaac |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38527178 |
ttcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaac |
38527277 |
T |
|
| Q |
472 |
atcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctgaaaat |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38527278 |
atcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgttaccatccaacaactcacctctgaaaat |
38527368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 38526982 - 38527125
Alignment:
| Q |
16 |
acaacaagaagtggaagtgttgacatcaatacaacagtaagaagccatcctctgctaaatgctatcacaaaaccgccaacaaatgttgctattagctgca |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
38526982 |
acaacaagaaatggaagtgttgacatcataacaacagtaagaagccacccttttgtaaatgctatcacaaaacccccaataaatgttgctattagctgca |
38527081 |
T |
|
| Q |
116 |
gaaatttcccaacctgttttttcaaacataaaatgaaaccttca |
159 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
38527082 |
gaaacttcccaacctgttttttcaaacacaaaattaaaccttca |
38527125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 375 - 558
Target Start/End: Complemental strand, 51198113 - 51197930
Alignment:
| Q |
375 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || | ||||| |||||||||||| | ||||| |
|
|
| T |
51198113 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttccaacaacctctccagtattagtttccttatcaaagaaactcacatc |
51198014 |
T |
|
| Q |
475 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctga |
558 |
Q |
| |
|
||| || || ||||||| | || || | ||| ||||||||||| ||||| || || |||| |||||| ||| ||| |||||| |
|
|
| T |
51198013 |
ttgcctcaaaattgtttggaggtataagcttctgattcttgcagcctgtctctcaccggtaatcatccagcaagtcaactctga |
51197930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 375 - 517
Target Start/End: Complemental strand, 51144458 - 51144316
Alignment:
| Q |
375 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc |
474 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| ||||||||||| ||||| ||||| || | ||||| |||||||||||| | ||||| |
|
|
| T |
51144458 |
ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc |
51144359 |
T |
|
| Q |
475 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgca |
517 |
Q |
| |
|
||| || || |||||||| | ||| || ||||| ||||||||| |
|
|
| T |
51144358 |
ttgcctcaaaattgttttaagatataaccctctaattcttgca |
51144316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 371 - 557
Target Start/End: Complemental strand, 51211643 - 51211457
Alignment:
| Q |
371 |
attcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaa |
470 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||| |||||||| ||||||||||| ||||| || || | | |||||| || ||||||||| | | |
|
|
| T |
51211643 |
attcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactga |
51211544 |
T |
|
| Q |
471 |
catcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaacaactcacctctg |
557 |
Q |
| |
|
|||||| ||||| |||| ||| | || ||| | |||||||||||||| ||||| || ||||| | |||||||||| |||||||| |
|
|
| T |
51211543 |
tatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcccctgtgatcatccaacaagacacctctg |
51211457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 375 - 517
Target Start/End: Original strand, 29938485 - 29938627
Alignment:
| Q |
375 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc |
474 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| ||||| | ||| ||||| ||||| ||||| |||| |||||||||||||| || | ||||| |
|
|
| T |
29938485 |
ataccttctcccccatggcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctcacatc |
29938584 |
T |
|
| Q |
475 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgca |
517 |
Q |
| |
|
||| || || |||||||| | || || ||||| ||||||||| |
|
|
| T |
29938585 |
ttgcctcaaaattgttttaaggtataagcctctaattcttgca |
29938627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 375 - 517
Target Start/End: Complemental strand, 51155598 - 51155456
Alignment:
| Q |
375 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc |
474 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||| |||||||| ||||| ||||| ||||| ||||| || | ||||| ||||||||||| | ||||| |
|
|
| T |
51155598 |
ataccttctcccccatggcatctttaattagaaatgtatcacctgacatccttccaacaacctctccagtattagtttccttatcaaagaagctcacatc |
51155499 |
T |
|
| Q |
475 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgca |
517 |
Q |
| |
|
||| || || |||||||| | || || ||||| ||||||||| |
|
|
| T |
51155498 |
ttgcctcaaaattgttttaaggtataaccctctaattcttgca |
51155456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 375 - 546
Target Start/End: Complemental strand, 5764298 - 5764127
Alignment:
| Q |
375 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc |
474 |
Q |
| |
|
||||||| || ||||||||||||||||| |||| || |||||||||||||| || | ||||||||||||| |||||| | |||||||| | || ||| |
|
|
| T |
5764298 |
ataccttttctcccatggcatcttgaatgagaattgtgtcaccagacattctaccaattacttctcctgtgtttgtttcagtgtcaaagaatgcaatatc |
5764199 |
T |
|
| Q |
475 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca |
546 |
Q |
| |
|
|| ||||||| |||||||| ||||| | | || ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
5764198 |
ctgctttaatatggttttcaagtacaaactacgaatccttgcagattgtctttctcctgtcaccatccaaca |
5764127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 375 - 546
Target Start/End: Original strand, 5833530 - 5833701
Alignment:
| Q |
375 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc |
474 |
Q |
| |
|
||||||| || ||||| || |||||||| |||| || |||||||||||||| || | || |||||||||| |||||| |||||||||| | || ||| |
|
|
| T |
5833530 |
ataccttttctcccatagcctcttgaatgagaattgtgtcaccagacattctaccaattacctctcctgtgtttgtttcagtatcaaagaatgcaatatc |
5833629 |
T |
|
| Q |
475 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca |
546 |
Q |
| |
|
||| |||||| |||||||| ||||| | | || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5833630 |
ctgttgtaatatggttttcaagtacaagctacgaatccttgcagcttgtctttctcctgttaccatccaaca |
5833701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 546
Target Start/End: Complemental strand, 5821211 - 5821051
Alignment:
| Q |
386 |
cccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatcttgtcttaata |
485 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||| | ||| ||||| || || ||| | |||||| | | || |||||| ||| || |
|
|
| T |
5821211 |
cccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccactggttgcttcagtgtcaaagtaggaaatatcttgctttagta |
5821112 |
T |
|
| Q |
486 |
ttgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca |
546 |
Q |
| |
|
| |||||||| ||||| || | || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5821111 |
tagttttcaagtacaagccacgaatccttgcagcttgtctttctcctgtcaccatccaaca |
5821051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 49738535 - 49738595
Alignment:
| Q |
375 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaac |
435 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || ||||| || |||||||| ||||| |
|
|
| T |
49738535 |
ataccttctctcccatggcatcttgaataagaactgtgtcacctgatattcttccaacaac |
49738595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 546
Target Start/End: Original strand, 29331233 - 29331404
Alignment:
| Q |
375 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtctgtttctttatcaaagaaagtaacatc |
474 |
Q |
| |
|
||||||| || ||||| || |||||||| |||| || |||||||||||||| | | || |||||||||| |||||| | |||||||| | || ||| |
|
|
| T |
29331233 |
ataccttttctcccatagcttcttgaatgagaattgtgtcaccagacattctactaattacctctcctgtgtttgtttcagtgtcaaagaatgcaatatc |
29331332 |
T |
|
| Q |
475 |
ttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtctttctcctgtaaccatccaaca |
546 |
Q |
| |
|
|| ||||||| |||||||| ||||| | | || || |||| ||||||||||||||| ||||||||||| |
|
|
| T |
29331333 |
ctgctttaatatggttttcaagtacaaactacgaatcctcgcagattgtctttctcctgtcaccatccaaca |
29331404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University