View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17897_low_12 (Length: 509)
Name: NF17897_low_12
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 34002103 - 34001606
Alignment:
| Q |
1 |
gaagtccaaaattgcacactgaacttt-agagtcaaaagtgaaaataaaactataaatcaagaacacaactataatttttagtattggagtggaaatatg |
99 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
34002103 |
gaagtccaaaattgcacactaaacttttagagtcaaaagtgaaaataaaactataaatcaagaacacaactataatttt-agtattggagtagaaatatg |
34002005 |
T |
|
| Q |
100 |
agattattcttaaattacatgtggcatcatgttatccccttaaaataacttcttctattgactaaacattatcagaacataaaaagatagttcttcaccc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34002004 |
agattattcttaaattacatgtggcatcatgttatccccttaaaataacttcttctattgactaaacattttcagaacataaaaagatagttcttcaccc |
34001905 |
T |
|
| Q |
200 |
cttttgtaataaagatattcttaatgtacaaaccaagaacactccttcaagtggacccaaaccttactaatgggataatggagaacaatagccgtaagtt |
299 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34001904 |
cttttgcaataaagatattcttaatgtacaaaccacgaacactccttcaactggacccaaaccttactaatgggataatggagaacaatagccgtaagtt |
34001805 |
T |
|
| Q |
300 |
cagcaatggatgccaactactgactacttggtgacataagcac------ttgcagggatggaatttgggggtggtccaaagttcatgtaatggtgaagtg |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34001804 |
cagcaatggatgccaactactgactacttggtgacataagcacttggagttggagggatggaatttgggggtggtccaaagttcatgtaatggtgaagtg |
34001705 |
T |
|
| Q |
394 |
ggtgaggaacaccatacagcgtgtgttatttgtcatatatataggcatagtaagtgttgtttcagtcatataatttgtgtaatgacccacactccatag |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34001704 |
ggtgaggaacaccatacagcgtgtgttatttgtcagatatataggcatagtaagtgttgtttcagtcatataatttgtgtaatgacccacactccatag |
34001606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 34005520 - 34005462
Alignment:
| Q |
207 |
aataaagatattcttaatgtacaaaccaagaacactccttcaagtggacccaaacctta |
265 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
34005520 |
aataaagatgctcttaatgtacagagcaagaacactccttcaacaggacccaaacctta |
34005462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University