View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_15 (Length: 461)
Name: NF17897_low_15
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 4392256 - 4391972
Alignment:
| Q |
13 |
gattattctaatggatgaggttgttgtatgggaataaataggggttgaggggatggaggattttcaaactttcaaagtcaagaatattgggttgggtgtg |
112 |
Q |
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| T |
4392256 |
gattattctaatggatgaggttgttgtatgggaataaataggggttgaggggatggaggattttcaaactttcaaagtcaagaatattgggttgggtgtg |
4392157 |
T |
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| Q |
113 |
tactagtttttgattggaaaacggtggtgggttagtaattgcaagtattttgggtcattttgggcaaagtaaggactaaggtttttggattgaatcgagg |
212 |
Q |
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| T |
4392156 |
tactagtttttgattggaaaacggtggtgggttagtaattgcaagtattttgggtcattttgggcaaagtaaggacttaggtttttggattgaatcgagg |
4392057 |
T |
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| Q |
213 |
gagaggcatatttattgtctattttacttccacacatgtatattttccatcacttaatgtaaattaaaattcatgtatattctaccc |
299 |
Q |
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| T |
4392056 |
--gaggcatatttattgtctattttacttctacacatgtatattttccatcacttaatgtaaattaaaattcatgtatattctaccc |
4391972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 4391646 - 4391585
Alignment:
| Q |
308 |
ggaattaattcatgtatatagtttttccacaaaaagcatcattttaggaagattaagagtac |
369 |
Q |
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| T |
4391646 |
ggaattaattcatgtctatagtttttccagaaaaagcatcattttaggaagattaagagtac |
4391585 |
T |
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