View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17897_low_19 (Length: 432)

Name: NF17897_low_19
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17897_low_19
NF17897_low_19
[»] chr6 (5 HSPs)
chr6 (10-407)||(35176245-35176636)
chr6 (348-400)||(31098704-31098756)
chr6 (356-404)||(35177333-35177381)
chr6 (355-404)||(16249609-16249658)
chr6 (358-406)||(2197030-2197078)
[»] chr5 (3 HSPs)
chr5 (129-404)||(42909050-42909318)
chr5 (364-408)||(42910052-42910096)
chr5 (355-404)||(14947484-14947533)
[»] chr7 (6 HSPs)
chr7 (265-404)||(26854879-26855018)
chr7 (35-173)||(11695693-11695838)
chr7 (354-404)||(38319285-38319335)
chr7 (265-404)||(11696022-11696161)
chr7 (355-404)||(19794397-19794446)
chr7 (45-104)||(34369219-34369279)
[»] chr2 (4 HSPs)
chr2 (265-404)||(35411266-35411405)
chr2 (35-173)||(33474755-33474900)
chr2 (265-380)||(33475084-33475199)
chr2 (189-237)||(35411195-35411243)
[»] chr4 (3 HSPs)
chr4 (264-404)||(25611670-25611810)
chr4 (267-405)||(7894108-7894249)
chr4 (370-404)||(19716903-19716937)
[»] chr1 (8 HSPs)
chr1 (265-405)||(50138245-50138385)
chr1 (35-173)||(50137916-50138061)
chr1 (355-404)||(48980705-48980754)
chr1 (355-405)||(38634961-38635011)
chr1 (129-172)||(43316528-43316573)
chr1 (267-404)||(51719437-51719574)
chr1 (129-173)||(51719780-51719825)
chr1 (364-404)||(51311649-51311689)
[»] chr3 (4 HSPs)
chr3 (45-120)||(52173354-52173424)
chr3 (264-404)||(15844532-15844672)
chr3 (355-399)||(52604284-52604328)
chr3 (45-104)||(52175338-52175397)
[»] scaffold0047 (1 HSPs)
scaffold0047 (265-405)||(50416-50556)
[»] chr8 (2 HSPs)
chr8 (129-173)||(43942735-43942780)
chr8 (35-79)||(43942668-43942712)
[»] scaffold0027 (2 HSPs)
scaffold0027 (35-79)||(18434-18478)
scaffold0027 (267-404)||(18022-18159)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 35176636 - 35176245
Alignment:
Q  10 ataatactaaataacgtgtactgtggatatgaagtaaaggatgtggtactgttgtggtggtttttcagatatgaacatttt-ttgtggttgtggttgtga 108  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  35176636 ataatactaaataacgtgtactgtggatatgaagaaaaggatgtggtactgttgcggtggtttttcagatatgaacattttcttgtggttgtggttgtga 35176537  T
Q  109 tttttcagatctgaatttttaagaaaaaattgatgaagatgaagattcttgaagaacacatgaatgtcacaaataagctcaaaaacccattaataagttt 208  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35176536 tttttcaaatctgaatttttaagaaaaaattgatgcagatgaagattcttgaagaacacatgaatgtcacaaataagctcaaaagcccattaataagttt 35176437  T
Q  209 aatcaaaaacaattcataggtggggtcacnnnnnnngggtagacaaaactacaactacaaaaagttgataacaagttaccggtaatagatcttaaccatc 308  Q
    ||||| |||||||||||| |||| |||||       |||| |||||      ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35176436 aatcataaacaattcataagtggtgtcac-ttttttgggtggacaa------aactacaaaaagttgataacaagttaccggtaataaatcttaaccatc 35176344  T
Q  309 taaatataataataatatatcgatggctaacatttgtttagaaggtaacttgtacatggtgcacaaatttatgtcttgtgcatgctaaatgccacctga 407  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  35176343 caaatataataataatatatcaatggctaacatttgtttagaaggtaacttgtgcatggtgcacaaatttatatcttgtgcatgctaaatgccacctga 35176245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 400
Target Start/End: Complemental strand, 31098756 - 31098704
Alignment:
Q  348 agaaggtaacttgtacatggtgcacaaatttatgtcttgtgcatgctaaatgc 400  Q
    |||| ||||||||| ||||||||||||||||||   |||||||||||||||||    
T  31098756 agaaagtaacttgtgcatggtgcacaaatttataatttgtgcatgctaaatgc 31098704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 35177333 - 35177381
Alignment:
Q  356 acttgtacatggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    ||||||| ||| | |||||||||||||||||| ||||||||||||||||    
T  35177333 acttgtatatgatacacaaatttatgtcttgttcatgctaaatgccacc 35177381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 16249609 - 16249658
Alignment:
Q  355 aacttgtacatggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    |||||||  ||| ||||||| |||||| ||||||||||||||||||||||    
T  16249609 aacttgtgaatgatgcacaagtttatgacttgtgcatgctaaatgccacc 16249658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 2197030 - 2197078
Alignment:
Q  358 ttgtacatggtgcacaaatttatgtcttgtgcatgctaaatgccacctg 406  Q
    |||| |||||||||||||| |||   |||||||||||||||||||||||    
T  2197030 ttgtgcatggtgcacaaatctatcatttgtgcatgctaaatgccacctg 2197078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 129 - 404
Target Start/End: Complemental strand, 42909318 - 42909050
Alignment:
Q  129 aagaaaaaattgatgaagatgaagattcttgaagaacacatgaatgtcacaaataagctcaaaaacccattaataagtttaatcaaaaacaattcatagg 228  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||   ||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  42909318 aagaacaaattgatgaagatgaagattctt-aagaacacatgaatacaacagataagctcaaaaacccattaataggtttaatcataaataattcatagg 42909220  T
Q  229 tggggtcacnnnnnnngggtagacaaaactacaactacaaaaagttgataacaagttaccggtaatagatcttaaccatctaaatataataataatatat 328  Q
    |||||||||         ||||||||||||||||      ||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||    
T  42909219 tggggtcactgtgtttttgtagacaaaactacaa------aaagttgataacaagttactggtaatagattttaaccatccaaatataataataatatat 42909126  T
Q  329 cgatggctaacatttgtttagaaggtaacttgtacatggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    | ||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  42909125 caatggctaacatttgtttagaaagtaatttgtgcatggtgcacaaatttatgtcttgtgcatgctaaatgtcacc 42909050  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 42910052 - 42910096
Alignment:
Q  364 atggtgcacaaatttatgtcttgtgcatgctaaatgccacctgaa 408  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  42910052 atggtgcacaaatttatgttttgtgcatgctaaatgccacctgaa 42910096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 14947484 - 14947533
Alignment:
Q  355 aacttgtacatggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    ||||||| ||||||||||||||||    ||||||||||||||||||||||    
T  14947484 aacttgtgcatggtgcacaaattttatacttgtgcatgctaaatgccacc 14947533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 265 - 404
Target Start/End: Complemental strand, 26855018 - 26854879
Alignment:
Q  265 acaaaaagttgataacaagttaccggtaatagatcttaaccatctaaatataataataatatatcgatggctaacatttgtttagaaggtaacttgtaca 364  Q
    ||||||||||||||||| || | ||||||| |||||||||| || |||||||||||||||||||| |||||||  |||  ||||||| | || |||| ||    
T  26855018 acaaaaagttgataacaggtaatcggtaattgatcttaaccgtccaaatataataataatatatctatggctagtattaatttagaaagcaagttgtgca 26854919  T
Q  365 tggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    || |||||||||||||   ||||||||  |||||||||||    
T  26854918 tgatgcacaaatttataatttgtgcattgtaaatgccacc 26854879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 11695693 - 11695838
Alignment:
Q  35 gatatgaagtaaaggatgtggtactgttgtggtggtttttcagatatgaacatttt-ttgtggttgtggttgt---gatttttcagatctgaattttt-- 128  Q
    ||||| ||| |||||||||||||  ||||||||||||||||| | ||||||||||| |||||||||||||| |   || |||  ||||||||||||||      
T  11695693 gatattaagaaaaggatgtggtaaggttgtggtggtttttcaaaaatgaacattttcttgtggttgtggtttttcaga-tttaaagatctgaatttttag 11695791  T
Q  129 -aagaaaaaattgatgaagatgaagattc-ttgaagaacacatgaat 173  Q
     |||||||||||| | ||||||||||||| || ||||||||||||||    
T  11695792 gaagaaaaaattggtaaagatgaagattctttaaagaacacatgaat 11695838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 38319285 - 38319335
Alignment:
Q  354 taacttgtacatggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  38319285 taacttgtgcatggagcacaaatttatgtcttgtgcatgctaaatgccacc 38319335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 404
Target Start/End: Original strand, 11696022 - 11696161
Alignment:
Q  265 acaaaaagttgataacaagttaccggtaatagatcttaaccatctaaatataataataatatatcgatggctaacatttgtttagaaggtaacttgtaca 364  Q
    ||||||||||| ||| |||| ||||||  | ||||| |||| || | ||| |||||||||||||| |||| || || | | | ||||||||||||||  |    
T  11696022 acaaaaagttggtaataagtaaccggtctttgatctgaaccgtccatataaaataataatatatcaatggttatcaatggatgagaaggtaacttgtgta 11696121  T
Q  365 tggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    || |||||||||||||   ||||||||| |||||||||||    
T  11696122 tgatgcacaaatttataatttgtgcatgttaaatgccacc 11696161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 19794446 - 19794397
Alignment:
Q  355 aacttgtacatggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    ||||||| ||||||||||||||||||   |||||||||||||||||||||    
T  19794446 aacttgtgcatggtgcacaaatttatcaattgtgcatgctaaatgccacc 19794397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 34369219 - 34369279
Alignment:
Q  45 aaaggatgtggtactgttgtggtggtttttcagatatgaacatttt-ttgtggttgtggtt 104  Q
    ||||||||||||| | ||||||| |||||| ||||||||||||||| |||| |||||||||    
T  34369219 aaaggatgtggtattattgtggtagttttttagatatgaacattttcttgtagttgtggtt 34369279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 404
Target Start/End: Original strand, 35411266 - 35411405
Alignment:
Q  265 acaaaaagttgataacaagttaccggtaatagatcttaaccatctaaatataataataatatatcgatggctaacatttgtttagaaggtaacttgtaca 364  Q
    |||||||||||  ||||||| |||  |||| |||||||||| |  ||||||||||||||||||||||||||||  |||  ||||||  | ||||||| ||    
T  35411266 acaaaaagttggcaacaagtaaccaataattgatcttaaccgttcaaatataataataatatatcgatggctagtattaatttagatagcaacttgtgca 35411365  T
Q  365 tggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    || |||||||||||||  |||||||||  |||||||||||    
T  35411366 tgatgcacaaatttataacttgtgcattgtaaatgccacc 35411405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 33474755 - 33474900
Alignment:
Q  35 gatatgaagtaaaggatgtggtactgttgtggtggtttttcagatatgaacatttttt-gtggttgtggttgt---gatttttcagatctgaattttta- 129  Q
    ||||| ||| |||||||||||||  |||||||||||||| || | ||||||||||||| ||||||||| || |   |||||   |||||||||||||||     
T  33474755 gatattaagaaaaggatgtggtaaggttgtggtggttttccaaaaatgaacatttttttgtggttgtgctttttcagatttaa-agatctgaatttttag 33474853  T
Q  130 --agaaaaaattgatgaagatgaagattc-ttgaagaacacatgaat 173  Q
      ||||||||||| | ||||||||||||| |||||||||||||||||    
T  33474854 aaagaaaaaattggtaaagatgaagattctttgaagaacacatgaat 33474900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 380
Target Start/End: Original strand, 33475084 - 33475199
Alignment:
Q  265 acaaaaagttgataacaagttaccggtaatagatcttaaccatctaaatataataataatatatcgatggctaacatttgtttagaaggtaacttgtaca 364  Q
    ||||||||||| ||| |||| ||||||  | ||||| |||| || | ||| |||||||||||||| |||| || || | | | |||||||||||||| ||    
T  33475084 acaaaaagttggtaataagtaaccggtctttgatctgaaccgtccatataaaataataatatatcaatggttatcaatggatgagaaggtaacttgtgca 33475183  T
Q  365 tggtgcacaaatttat 380  Q
    || |||||||||||||    
T  33475184 tgatgcacaaatttat 33475199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 35411195 - 35411243
Alignment:
Q  189 aaaaacccattaataagtttaatcaaaaacaattcataggtggggtcac 237  Q
    |||||||||||||  |||||||| | ||||||||||||||| |||||||    
T  35411195 aaaaacccattaactagtttaattataaacaattcataggtagggtcac 35411243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 404
Target Start/End: Complemental strand, 25611810 - 25611670
Alignment:
Q  264 tacaaaaagttgataacaagttaccggtaatagatcttaaccatctaaatataataataatatatcgatggctaacatttgtttagaaggtaacttgtac 363  Q
    |||||||||||||||| | ||  || ||| ||||||| |||| || ||||||||||||||||| || |||||||  ||| ||||| || | || ||| ||    
T  25611810 tacaaaaagttgataataggtagccagtagtagatctcaaccgtccaaatataataataatatttcaatggctacaattggtttacaaagcaatttggac 25611711  T
Q  364 atggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    |||||||||||||||    ||||||||| ||||||||||||    
T  25611710 atggtgcacaaattttacacttgtgcatactaaatgccacc 25611670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 405
Target Start/End: Complemental strand, 7894249 - 7894108
Alignment:
Q  267 aaaaagttgataacaagttaccggtaatagatcttaaccatctaaatataataataata---tatcgatggctaacatttgtttagaaggtaacttgtac 363  Q
    ||||||||| |||||  | |||||||||  ||||||||| || ||||||||||||||||   |||| |||||||  |||  ||||||| | ||||||| |    
T  7894249 aaaaagttggtaacagataaccggtaattaatcttaaccgtccaaatataataataataatatatctatggctagtattaatttagaaagcaacttgtgc 7894150  T
Q  364 atggtgcacaaatttatgtcttgtgcatgctaaatgccacct 405  Q
    ||| |||||||||||||   ||||||||  ||||||| ||||    
T  7894149 atgatgcacaaatttataatttgtgcattgtaaatgctacct 7894108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 19716903 - 19716937
Alignment:
Q  370 cacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    |||||||||||||||||||||||||||||||||||    
T  19716903 cacaaatttatgtcttgtgcatgctaaatgccacc 19716937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 405
Target Start/End: Original strand, 50138245 - 50138385
Alignment:
Q  265 acaaaaagttgataacaagttaccggtaatagatcttaaccatctaaatataataataatatatcgatggctaacatttgtttagaaggtaacttgtaca 364  Q
    ||||||||||| ||| |||| ||||||  | ||||| |||| || | ||| |||||||||||||| |||| || || | | | |||||||||||||| ||    
T  50138245 acaaaaagttggtaataagtaaccggtctttgatctgaaccgtccatataaaataataatatatcaatggttatcaatagatgagaaggtaacttgtgca 50138344  T
Q  365 tggtgcacaaatttatgtcttgtgcatgctaaatgccacct 405  Q
    || |||||||||||||   ||||||||| ||||||||||||    
T  50138345 tgatgcacaaatttataatttgtgcatgttaaatgccacct 50138385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 50137916 - 50138061
Alignment:
Q  35 gatatgaagtaaaggatgtggtactgttgtggtggtttttcagatatgaacatttttt-gtggttgtggttgt---gatttttcagatctgaattttta- 129  Q
    ||||| ||| |||||||||||||  |||||||||||||| || | ||||||||||||| ||||||||| || |   |||||   |||||||||||||||     
T  50137916 gatattaagaaaaggatgtggtaaggttgtggtggttttccaaaaatgaacatttttttgtggttgtgctttttcagatttaa-agatctgaatttttag 50138014  T
Q  130 --agaaaaaattgatgaagatgaagattc-ttgaagaacacatgaat 173  Q
      ||||||||||| | ||||||||||||| |||||||||||||||||    
T  50138015 aaagaaaaaattggtaaagatgaagattctttgaagaacacatgaat 50138061  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 48980754 - 48980705
Alignment:
Q  355 aacttgtacatggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    |||||||  ||||||||||| |||||| ||||||||||||||||||||||    
T  48980754 aacttgtgaatggtgcacaagtttatgacttgtgcatgctaaatgccacc 48980705  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 38634961 - 38635011
Alignment:
Q  355 aacttgtacatggtgcacaaatttatgtcttgtgcatgctaaatgccacct 405  Q
    ||||||| |||| |||||||||||||   ||||||||||||||||||||||    
T  38634961 aacttgtgcatgatgcacaaatttatcaattgtgcatgctaaatgccacct 38635011  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 43316573 - 43316528
Alignment:
Q  129 aagaaaaaattgatgaagatgaagattc--ttgaagaacacatgaa 172  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||    
T  43316573 aagaaaaaattggtgaagatgaagattcttttgaagaacacatgaa 43316528  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 404
Target Start/End: Complemental strand, 51719574 - 51719437
Alignment:
Q  267 aaaaagttgataacaagttaccggtaatagatcttaaccatctaaatataataataatatatcgatggctaacatttgtttagaaggtaacttgtacatg 366  Q
    ||||||||| ||| | || ||||||  | ||||| |||| || | |||||||||||||||||| |||| || || |   | ||||| ||| |||| ||||    
T  51719574 aaaaagttggtaataggtaaccggtctttgatctgaaccgtccatatataataataatatatcaatggttatcaatgaatgagaagataatttgtgcatg 51719475  T
Q  367 gtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
     |||||||||||||   |||||||| ||||||||||||    
T  51719474 atgcacaaatttataatttgtgcatactaaatgccacc 51719437  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 51719825 - 51719780
Alignment:
Q  129 aagaaaaaattgatgaagatgaagattc-ttgaagaacacatgaat 173  Q
    |||||||||||| |||| |||||||||| |||||||||||||||||    
T  51719825 aagaaaaaattggtgaatatgaagattctttgaagaacacatgaat 51719780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 51311649 - 51311689
Alignment:
Q  364 atggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    |||||||||||||||||   |||||||||||||||||||||    
T  51311649 atggtgcacaaatttatactttgtgcatgctaaatgccacc 51311689  T

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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 52173424 - 52173354
Alignment:
Q  45 aaaggatgtggtactgttgtggtggtttttcagatatgaacattttttgtggttgtggttgtgatttttcagatct 120  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||||     ||||||||||||||||||||||||    
T  52173424 aaaggatgtggtattattgtggtggttttttagatatgaacattttt-----ttgtggttgtgatttttcagatct 52173354  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 404
Target Start/End: Original strand, 15844532 - 15844672
Alignment:
Q  264 tacaaaaagttgataacaagttaccggtaatagatcttaaccatctaaatataataataatatatcgatggctaacatttgtttagaaggtaacttgtac 363  Q
    |||||||||||||||| | ||  || ||| ||||| | |||| || ||||||||||||||||| || |||||||  ||| ||||| || | || ||| ||    
T  15844532 tacaaaaagttgataataggtagccagtagtagatttcaaccgtccaaatataataataatatctcaatggctacaattggtttacaaagcaatttggac 15844631  T
Q  364 atggtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
    |||||||||||||||    ||||||||| ||||||||||||    
T  15844632 atggtgcacaaattttacacttgtgcatactaaatgccacc 15844672  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 52604328 - 52604284
Alignment:
Q  355 aacttgtacatggtgcacaaatttatgtcttgtgcatgctaaatg 399  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  52604328 aacttgtgcatggtgcacaaatttatgtcttgtgcatgctaaatg 52604284  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 52175397 - 52175338
Alignment:
Q  45 aaaggatgtggtactgttgtggtggtttttcagatatgaacatttt-ttgtggttgtggtt 104  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||||    
T  52175397 aaaggatgtggtattattgtggtggttttt-agatatgaacattttcttgtggttgtggtt 52175338  T

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Target: scaffold0047 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 405
Target Start/End: Complemental strand, 50556 - 50416
Alignment:
Q  265 acaaaaagttgataacaagttaccggtaatagatcttaaccatctaaatataataataatatatcgatggctaacatttgtttagaaggtaacttgtaca 364  Q
    ||||||||||| ||| |||| ||||||  | ||||| |||| || | ||| |||||||||||||| |||| || || | | | |||| ||||||||| ||    
T  50556 acaaaaagttggtaataagtaaccggtctttgatctgaaccgtccatataaaataataatatatcaatggttatcaatggatgagaatgtaacttgtgca 50457  T
Q  365 tggtgcacaaatttatgtcttgtgcatgctaaatgccacct 405  Q
    || |||||||||||||   ||||||||| ||||||||||||    
T  50456 tgatgcacaaatttataatttgtgcatgttaaatgccacct 50416  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 43942735 - 43942780
Alignment:
Q  129 aagaaaaaattgatgaagatgaagattc-ttgaagaacacatgaat 173  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||    
T  43942735 aagaaaaaattggtgaagatgaagattctttgaagaacacatgaat 43942780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 43942668 - 43942712
Alignment:
Q  35 gatatgaagtaaaggatgtggtactgttgtggtggtttttcagat 79  Q
    ||||| ||| ||||||||||||||||||||||||||||| |||||    
T  43942668 gatattaagaaaaggatgtggtactgttgtggtggttttccagat 43942712  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 18478 - 18434
Alignment:
Q  35 gatatgaagtaaaggatgtggtactgttgtggtggtttttcagat 79  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||    
T  18478 gatattaagaaaagaatgtggtactgttgtggtggtttttcagat 18434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 404
Target Start/End: Complemental strand, 18159 - 18022
Alignment:
Q  267 aaaaagttgataacaagttaccggtaatagatcttaaccatctaaatataataataatatatcgatggctaacatttgtttagaaggtaacttgtacatg 366  Q
    ||||||||| ||| | || ||||||  | ||||| |||| || | |||||||||||||||||| |||| || || |   | ||||| ||| |||| ||||    
T  18159 aaaaagttggtaataggtaaccggtctttgatctgaaccgtccatatataataataatatatcaatggttatcaatgaatgagaagataatttgtgcatg 18060  T
Q  367 gtgcacaaatttatgtcttgtgcatgctaaatgccacc 404  Q
     |||||||||||||   |||||||| ||||||||||||    
T  18059 atgcacaaatttataatttgtgcatactaaatgccacc 18022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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