View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17897_low_2 (Length: 783)

Name: NF17897_low_2
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17897_low_2
NF17897_low_2
[»] chr7 (18 HSPs)
chr7 (193-774)||(46091200-46091782)
chr7 (19-196)||(46091817-46091994)
chr7 (19-174)||(46086737-46086891)
chr7 (383-448)||(12835011-12835076)
chr7 (384-484)||(39539836-39539936)
chr7 (384-439)||(5006584-5006639)
chr7 (384-442)||(35536044-35536102)
chr7 (384-445)||(24973878-24973939)
chr7 (233-312)||(44808228-44808307)
chr7 (388-454)||(30496629-30496695)
chr7 (403-445)||(33894557-33894599)
chr7 (384-434)||(39591542-39591592)
chr7 (398-456)||(40191414-40191472)
chr7 (243-304)||(8094384-8094445)
chr7 (384-433)||(22759132-22759181)
chr7 (385-434)||(28178914-28178963)
chr7 (389-434)||(43152982-43153027)
chr7 (384-457)||(45593794-45593867)
[»] chr4 (14 HSPs)
chr4 (384-462)||(30024617-30024695)
chr4 (389-483)||(3662245-3662338)
chr4 (402-483)||(14011130-14011211)
chr4 (384-481)||(42321954-42322051)
chr4 (397-461)||(2980559-2980623)
chr4 (228-283)||(32420974-32421029)
chr4 (402-484)||(19422313-19422395)
chr4 (230-280)||(29600942-29600992)
chr4 (243-313)||(49003973-49004042)
chr4 (402-456)||(51555960-51556014)
chr4 (389-442)||(7601696-7601749)
chr4 (418-483)||(9843775-9843840)
chr4 (385-445)||(25548182-25548240)
chr4 (385-445)||(51044534-51044595)
[»] chr8 (16 HSPs)
chr8 (384-456)||(7026654-7026726)
chr8 (386-441)||(42597339-42597394)
chr8 (233-312)||(9700071-9700150)
chr8 (389-460)||(14482121-14482192)
chr8 (387-461)||(10727115-10727189)
chr8 (390-434)||(30627983-30628027)
chr8 (387-445)||(1112787-1112845)
chr8 (384-442)||(14280476-14280534)
chr8 (388-442)||(37444494-37444548)
chr8 (385-455)||(40280281-40280351)
chr8 (384-461)||(3645891-3645968)
chr8 (384-445)||(4558732-4558793)
chr8 (384-461)||(13652133-13652210)
chr8 (384-461)||(13710776-13710853)
chr8 (390-455)||(29592254-29592319)
chr8 (384-429)||(35374448-35374493)
[»] chr3 (20 HSPs)
chr3 (407-481)||(25185891-25185965)
chr3 (402-483)||(52450145-52450226)
chr3 (385-456)||(16790432-16790503)
chr3 (384-434)||(15304422-15304472)
chr3 (385-455)||(44374720-44374790)
chr3 (384-445)||(1395605-1395666)
chr3 (402-483)||(24235776-24235857)
chr3 (402-483)||(25964338-25964419)
chr3 (402-483)||(41159005-41159086)
chr3 (384-432)||(36783409-36783457)
chr3 (233-313)||(50211804-50211884)
chr3 (389-440)||(2128331-2128382)
chr3 (384-434)||(10101551-10101601)
chr3 (384-434)||(10212476-10212526)
chr3 (384-434)||(36646457-36646507)
chr3 (384-434)||(42809246-42809296)
chr3 (401-483)||(48528474-48528556)
chr3 (384-434)||(49586991-49587041)
chr3 (384-445)||(20192681-20192742)
chr3 (386-480)||(48364956-48365046)
[»] chr5 (12 HSPs)
chr5 (384-461)||(6733968-6734044)
chr5 (400-445)||(13224363-13224408)
chr5 (386-422)||(36157912-36157948)
chr5 (402-445)||(7096220-7096263)
chr5 (386-433)||(10363696-10363743)
chr5 (402-461)||(20982228-20982287)
chr5 (437-483)||(1084234-1084280)
chr5 (384-461)||(9202823-9202901)
chr5 (386-440)||(12407738-12407792)
chr5 (401-455)||(26516222-26516276)
chr5 (384-429)||(12975297-12975342)
chr5 (391-444)||(39128574-39128627)
[»] chr1 (13 HSPs)
chr1 (384-461)||(40304129-40304206)
chr1 (397-443)||(172277-172323)
chr1 (234-346)||(10199330-10199445)
chr1 (385-441)||(50319230-50319286)
chr1 (20-126)||(37476477-37476583)
chr1 (388-434)||(37841943-37841989)
chr1 (385-459)||(38651485-38651559)
chr1 (230-283)||(37416904-37416957)
chr1 (386-475)||(40357963-40358052)
chr1 (384-457)||(44032074-44032147)
chr1 (248-289)||(45769692-45769733)
chr1 (384-421)||(47877080-47877117)
chr1 (385-458)||(48748659-48748731)
[»] chr6 (14 HSPs)
chr6 (384-454)||(1810378-1810445)
chr6 (384-443)||(29274304-29274363)
chr6 (384-434)||(281923-281973)
chr6 (384-454)||(10452435-10452505)
chr6 (384-434)||(24782004-24782054)
chr6 (384-445)||(4006648-4006709)
chr6 (406-483)||(4247731-4247808)
chr6 (417-477)||(8010259-8010319)
chr6 (232-304)||(26559159-26559231)
chr6 (384-483)||(9668060-9668159)
chr6 (388-442)||(9093635-9093689)
chr6 (384-430)||(30537021-30537067)
chr6 (230-283)||(12111066-12111119)
chr6 (403-476)||(27889937-27890010)
[»] chr2 (17 HSPs)
chr2 (400-484)||(7936921-7937005)
chr2 (385-445)||(11344360-11344420)
chr2 (384-461)||(3673725-3673802)
chr2 (382-455)||(35809857-35809929)
chr2 (384-484)||(17952776-17952876)
chr2 (323-451)||(25609724-25609852)
chr2 (389-445)||(36114603-36114659)
chr2 (384-459)||(18962113-18962188)
chr2 (388-434)||(656856-656902)
chr2 (384-461)||(11393440-11393518)
chr2 (384-461)||(11410101-11410179)
chr2 (233-283)||(15370244-15370294)
chr2 (385-443)||(32098384-32098442)
chr2 (384-434)||(40837503-40837553)
chr2 (402-443)||(5133708-5133749)
chr2 (384-445)||(28902011-28902072)
chr2 (388-461)||(35459828-35459901)
[»] scaffold0024 (1 HSPs)
scaffold0024 (384-445)||(27510-27571)
[»] scaffold0590 (1 HSPs)
scaffold0590 (402-454)||(1167-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (402-454)||(2756-2808)
[»] scaffold0020 (1 HSPs)
scaffold0020 (402-444)||(160065-160107)


Alignment Details
Target: chr7 (Bit Score: 488; Significance: 0; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 193 - 774
Target Start/End: Complemental strand, 46091782 - 46091200
Alignment:
Q  193 atagtcgttaaactaattatcacatcacaccaaatgtctatttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatag 292  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46091782 atagtcgttatactaattatcacatcacaccaaatgtctatttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatag 46091683  T
Q  293 aacttatgaaaataatttatattttcatccgttgttttcaacttattttcataaacttttcattataatttctgaaaacaaactatggtaaatatgaaaa 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46091682 aacttatgaaaataatttatattttcatccgttgttttcaacttattttcataaacttttcatgataatttctgaaaacaaactatggtaaatatgaaaa 46091583  T
Q  393 caattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaacatagtcaaaa 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46091582 caattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaacatagtcaaaa 46091483  T
Q  493 acttttacaaacaacaaactaaaaacaatccatgttagaaaagaaagattcatccctgacc-nnnnnnnnnnnnnnnngattcacctttcatctccaaaa 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||    
T  46091482 acttttacaaacaacaaactaaaaacaatccatgttagaaaagaaagattcatccctgaccaaaaaaaaaaaaaaaaagattcacctttcatctccaaaa 46091383  T
Q  592 tcagtcagccaattttgtgtcactacaagggatttaatc-ttaagttttccaaactatactcttcactccaagaactatcatcacatacaagatattgca 690  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46091382 tcagtcagccaattttgtgtcacta-aagggatttaatctttaagttttccaaactatactcttcactccaagaactatcatcacatacaagatattgca 46091284  T
Q  691 tcaatgaattgactctagacctcctttaataaagttttgaaatatatgcacttggatgagattccatcgtaaccacaggttctg 774  Q
     || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  46091283 acagtgaattgactctagacctcctttaataaagttttgaaatatatgcacttggatgagattccatcataaccataggttctg 46091200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 46091994 - 46091817
Alignment:
Q  19 ccacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttcccacttttggatgatgtattcttgccaacaagctccctgcattttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46091994 ccacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttcccacttttggatgatgtattcttgccaacaagctccctgcattttt 46091895  T
Q  119 tagctgaatagagaaaacattttatgagcataagcaaaaaattataattaatgaaatgacctccatagtcaaagatag 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46091894 tagctgaatagagaaaacattttatgagcataagcaaaaaattataattaatgaaatgacctccatagtcaaagatag 46091817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 46086891 - 46086737
Alignment:
Q  19 ccacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttcccacttttggatgatgtattcttgccaacaagctccctgcattttt 118  Q
    |||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |  |||| |||||||||||||||||||||||    
T  46086891 ccacatgctaaacttccagagcccaaatcaaagcaatttaataatgtaaacttcccacttttggatgacgcgttctcgccaacaagctccctgcattttt 46086792  T
Q  119 tagctgaatagagaaaacattttatgagcataagcaaaaaattataattaatgaaa 174  Q
     |||||||  ||||||||| | | ||| ||||| | | |||||||| |||||||||    
T  46086791 cagctgaacggagaaaacagtgtgtgatcataaac-agaaattatagttaatgaaa 46086737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 383 - 448
Target Start/End: Original strand, 12835011 - 12835076
Alignment:
Q  383 aatatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcat 448  Q
    |||||||||||||||| | |||||||||||||| ||| ||| |||||| | |||||||||||||||    
T  12835011 aatatgaaaacaatttgactttattttatcttttgttgtagaaatagcatctgcataagcactcat 12835076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 484
Target Start/End: Original strand, 39539836 - 39539936
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    ||||||||||||||| | ||||||||  ||||  |||| | |||||||||| || ||||| | || |||||| ||||| ||||| |||||||||||||||    
T  39539836 atatgaaaacaatttgaatttattttcacttttattatcgaaatagcttatacaaaagcagttatatgataagcacttaattaagttgtttatccaaaca 39539935  T
Q  484 t 484  Q
    |    
T  39539936 t 39539936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 5006584 - 5006639
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcata 439  Q
    ||||||||||| ||| | |||||||||||||| |||||||||||||||||| ||||    
T  5006584 atatgaaaacagtttgactttattttatcttttgttataggaatagcttatacata 5006639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 35536102 - 35536044
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagc 442  Q
    ||||||||||||||| | |||||||||||||  ||||||| |||||||||| |||||||    
T  35536102 atatgaaaacaatttgactttattttatcttatgttatagaaatagcttatacataagc 35536044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 24973939 - 24973878
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    ||||| ||||||||| | |||||||||||||| ||||||| |||||||| | ||||||||||    
T  24973939 atatggaaacaatttgaatttattttatcttttgttatagaaatagcttttacataagcact 24973878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 44808307 - 44808228
Alignment:
Q  233 tttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaataatttat 312  Q
    ||||||| | |||||||||||| || || ||| ||||||| |||| |||||  |||||||| ||||||||||||| ||||    
T  44808307 tttggataaccttatttgagcttatttattagcataagcagttgtcagactgtttgatagaccttatgaaaataacttat 44808228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 30496695 - 30496629
Alignment:
Q  388 gaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgata 454  Q
    ||||||||||| | |||||||||| ||| ||||||| ||||| |||| ||||| |||| ||||||||    
T  30496695 gaaaacaatttgactttattttatattttgttatagaaatagtttatacataaacacttatgtgata 30496629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 33894599 - 33894557
Alignment:
Q  403 ttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||    
T  33894599 ttattttatcttttgttatagaaatagcttatacataagcact 33894557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 39591542 - 39591592
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    ||||||||||||||| | |||||||||||||| ||||||| |||| |||||    
T  39591542 atatgaaaacaatttgactttattttatcttttgttatagaaataacttat 39591592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 398 - 456
Target Start/End: Original strand, 40191414 - 40191472
Alignment:
Q  398 ttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaa 456  Q
    |||||||||||||||||| ||| ||| ||||||||| |||| || |||||| |||||||    
T  40191414 ttattttattttatcttttgttttagaaatagcttaagcattagtactcatatgataaa 40191472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 8094445 - 8094384
Alignment:
Q  243 cttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaa 304  Q
    |||||||||||| ||||| ||| ||||||| ||||||||||| |||| |||  |||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaa 8094384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 22759181 - 22759132
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagctta 433  Q
    ||||||||||||||||  |||||||||||||| ||||||  |||||||||    
T  22759181 atatgaaaacaattttcctttattttatcttttgttatacaaatagctta 22759132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 28178963 - 28178914
Alignment:
Q  385 tatgaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    |||||||||||| | | |||||||||||||| ||||||| ||||||||||    
T  28178963 tatgaaaacaatatgactttattttatcttttgttatagaaatagcttat 28178914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 43152982 - 43153027
Alignment:
Q  389 aaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    |||||||||| | |||||||||||||| ||||||| ||||||||||    
T  43152982 aaaacaatttaactttattttatcttttgttatagaaatagcttat 43153027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 457
Target Start/End: Original strand, 45593794 - 45593867
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaac 457  Q
    ||||||||||| ||| | |||||||||| ||| |||| || |||||||||| |||||||| | || ||||||||    
T  45593794 atatgaaaacagtttgactttattttatgttttgttacagaaatagcttatacataagcatttatatgataaac 45593867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 384 - 462
Target Start/End: Complemental strand, 30024695 - 30024617
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttc 462  Q
    ||||||||||||||||| |||||||||||||| ||||||| |||| |||||||||||| ||| || |||||||| ||||    
T  30024695 atatgaaaacaattttactttattttatcttttgttatagaaataacttatgcataagtacttatatgataaacgcttc 30024617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 389 - 483
Target Start/End: Complemental strand, 3662338 - 3662245
Alignment:
Q  389 aaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    |||||| ||| | |||||||||||||| ||||||||||||| |||| |||||||||| |  |||||||||||| | |||  |||||| |||||||    
T  3662338 aaaacagtttgactttattttatcttttgttataggaatagtttat-cataagcactaacatgataaacacttaagtaagctgtttagccaaaca 3662245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 14011211 - 14011130
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    |||||||||||||| ||||||  | |||||||| || || || | || |||||||||||| ||||| |||||||||||||||    
T  14011211 tttattttatcttttgttataaaactagcttatacacaatcatttatatgataaacacttaattaagttgtttatccaaaca 14011130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 481
Target Start/End: Original strand, 42321954 - 42322051
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaa 481  Q
    ||||||||||||||| | ||||||||||| || ||||||  |||||||||| ||||| |||| |||  |||| | | ||| ||| |||||||||||||    
T  42321954 atatgaaaacaatttgactttattttatcatttgttataaaaatagcttattcataaacacttatgctataagcgcctcactaagttgtttatccaaa 42322051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 2980559 - 2980623
Alignment:
Q  397 tttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 461  Q
    |||||||| ||| || ||| ||||||| |||||||||| |||||||||| || ||||||||||||    
T  2980559 tttattttgtttcattttttgttatagaaatagcttatacataagcacttatatgataaacactt 2980623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 32420974 - 32421029
Alignment:
Q  228 gtctatttggattaacttatttgagctcatctaatagtataagcatttgtgagact 283  Q
    ||||||||||||| ||||||||||||| | ||| ||| ||||||| ||||||||||    
T  32420974 gtctatttggattgacttatttgagcttacctactagcataagcacttgtgagact 32421029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 402 - 484
Target Start/End: Complemental strand, 19422395 - 19422313
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaacat 484  Q
    |||||| ||||||| ||||||| |||| ||||| |||||||| | || |||||| | ||| |||||  |||||||||||||||    
T  19422395 tttattatatcttttgttatagaaataacttatacataagcatttatatgataagcgcttaattaagctgtttatccaaacat 19422313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 29600942 - 29600992
Alignment:
Q  230 ctatttggattaacttatttgagctcatctaatagtataagcatttgtgag 280  Q
    ||||||||||| ||||||||||||| || |  |||||||||||||||||||    
T  29600942 ctatttggatttacttatttgagcttatttgctagtataagcatttgtgag 29600992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 49003973 - 49004042
Alignment:
Q  243 cttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaataatttata 313  Q
    |||||||||||| ||||| |||  ||||  |||||||||||| |||| ||||||||||||||||| |||||    
T  49003973 cttatttgagcttatctactagcttaagt-tttgtgagactatttgagagaacttatgaaaataagttata 49004042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 402 - 456
Target Start/End: Original strand, 51555960 - 51556014
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaa 456  Q
    |||||||||||||| ||||||  |||||||||| |||||||||| || |||||||    
T  51555960 tttattttatcttttgttataataatagcttatacataagcacttatatgataaa 51556014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 442
Target Start/End: Complemental strand, 7601749 - 7601696
Alignment:
Q  389 aaaacaattttattttattttatctttcgttataggaatagcttatgcataagc 442  Q
    |||||||||| | ||||||||||| || | |||||||||||||||| |||||||    
T  7601749 aaaacaatttaactttattttatcctttgctataggaatagcttatacataagc 7601696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 9843775 - 9843840
Alignment:
Q  418 ttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    |||||| |||||||||| |||||||| | || |||||| |||||  |||| |||||||||||||||    
T  9843775 ttatagaaatagcttatacataagcagttatatgataagcacttatttaagttgtttatccaaaca 9843840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 25548182 - 25548240
Alignment:
Q  385 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    ||||||||||| || | ||||||||| |||  ||||||| |||||||||||||||||||||    
T  25548182 tatgaaaacaacttaactttattttacctt--gttatagaaatagcttatgcataagcact 25548240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 51044534 - 51044595
Alignment:
Q  385 tatgaaaacaatttt-attttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    ||||||||||| ||| | |||||||||||||| ||||||| |||||||||| ||||| ||||    
T  51044534 tatgaaaacaagtttgactttattttatcttttgttatagaaatagcttatacataaacact 51044595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 384 - 456
Target Start/End: Complemental strand, 7026726 - 7026654
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaa 456  Q
    ||||||||||||||||| |||||||||||||| ||||||  | ||||||||||||||||||| || |||||||    
T  7026726 atatgaaaacaattttactttattttatcttttgttataacagtagcttatgcataagcacttatatgataaa 7026654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 42597394 - 42597339
Alignment:
Q  386 atgaaaacaattttattttattttatctttcgttataggaatagcttatgcataag 441  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||    
T  42597394 atgaaaacaattttactttattttatcttttgttatagaaatagcttatacataag 42597339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 9700150 - 9700071
Alignment:
Q  233 tttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaataatttat 312  Q
    |||||||||||||||||||||| ||||| ||| |||| || ||||||||||| |||| ||| ||| |||||  |||||||    
T  9700150 tttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttat 9700071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 389 - 460
Target Start/End: Complemental strand, 14482192 - 14482121
Alignment:
Q  389 aaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacact 460  Q
    |||||||||| | |||||||||||||| ||||||| ||||| |||| |||||||||| || |||||| ||||    
T  14482192 aaaacaatttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataagcact 14482121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 10727189 - 10727115
Alignment:
Q  387 tgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 461  Q
    |||||||| ||| | ||||||| |||||| | ||||| ||||||||||||||||||||| || |||| |||||||    
T  10727189 tgaaaacactttgaatttatttcatcttttgctatagaaatagcttatgcataagcacttatatgatgaacactt 10727115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 30627983 - 30628027
Alignment:
Q  390 aaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  30627983 aaacaattttattttattttatcttttgttacagaaatagcttat 30628027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 1112845 - 1112787
Alignment:
Q  387 tgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    |||||||||||| |  ||||||||||||| ||||||| |||||| ||| ||||||||||    
T  1112845 tgaaaacaatttaaccttattttatcttttgttatagaaatagcatatacataagcact 1112787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 442
Target Start/End: Original strand, 14280476 - 14280534
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagc 442  Q
    ||||||||||||||| |||| ||||||||||| | ||||| ||||| |||| |||||||    
T  14280476 atatgaaaacaatttaatttaattttatcttttgctatagaaataggttatacataagc 14280534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 37444494 - 37444548
Alignment:
Q  388 gaaaacaattttattttattttatctttcgttataggaatagcttatgcataagc 442  Q
    ||||||||||| | |||| ||||||||| ||||||| |||||||||| |||||||    
T  37444494 gaaaacaatttaactttactttatcttttgttatagtaatagcttatacataagc 37444548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 455
Target Start/End: Original strand, 40280281 - 40280351
Alignment:
Q  385 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataa 455  Q
    |||||||||||||||| |||||||||||||| ||| ||| |||| |||||  ||| ||||| || ||||||    
T  40280281 tatgaaaacaattttactttattttatcttttgttgtagaaataacttatatataggcacttatatgataa 40280351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 461
Target Start/End: Original strand, 3645891 - 3645968
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 461  Q
    ||||||||| | ||| ||||| |||||| |||  |||||| |||||||||| || ||||||| || ||||||||||||    
T  3645891 atatgaaaatagtttgattttgttttatattttcttatagaaatagcttatacacaagcacttatatgataaacactt 3645968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 4558793 - 4558732
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    ||||||||| ||||| | ||||||||||||||  |||||| |||||||||| ||||| ||||    
T  4558793 atatgaaaataatttaactttattttatcttttattatagaaatagcttatacataaacact 4558732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 461
Target Start/End: Complemental strand, 13652210 - 13652133
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 461  Q
    ||||||||||||||| | || |||  |||||| | ||||| |||||||||| |||||||||| |  ||||||||||||    
T  13652210 atatgaaaacaatttcacttcattccatcttttgctatagaaatagcttatacataagcacttagatgataaacactt 13652133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 461
Target Start/End: Complemental strand, 13710853 - 13710776
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 461  Q
    ||||||||||||||| | || |||  |||||| | ||||| |||||||||| |||||||||| |  ||||||||||||    
T  13710853 atatgaaaacaatttcacttcattccatcttttgctatagaaatagcttatacataagcacttagatgataaacactt 13710776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 29592254 - 29592319
Alignment:
Q  390 aaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataa 455  Q
    |||| ||||||||||||||||| ||| ||| ||  ||||||||||||| ||||||| || ||||||    
T  29592254 aaactattttattttattttatattttgttgtaaaaatagcttatgcagaagcactaatatgataa 29592319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 429
Target Start/End: Original strand, 35374448 - 35374493
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatag 429  Q
    ||||||||||||||| | |||||||||||||||| ||||| |||||    
T  35374448 atatgaaaacaatttaactttattttatctttcgctatagaaatag 35374493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 481
Target Start/End: Complemental strand, 25185965 - 25185891
Alignment:
Q  407 tttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaa 481  Q
    ||||||||| ||||||  |||| ||||| |||||||||| || |||||||||||| ||||| |||||||||||||    
T  25185965 tttatcttttgttatataaatatcttattcataagcacttatatgataaacacttaattaagttgtttatccaaa 25185891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 52450145 - 52450226
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    ||||||| |||||| ||||||| ||| ||||||||||||| |||  | |||||||||||| |||||  ||||||||||||||    
T  52450145 tttatttcatcttttgttatagaaattgcttatgcataagtacttgtatgataaacacttgattaagctgtttatccaaaca 52450226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 385 - 456
Target Start/End: Original strand, 16790432 - 16790503
Alignment:
Q  385 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaa 456  Q
    |||||||| ||||| |||||||||||||| | ||||||  |||||||||| |||||||||| || |||||||    
T  16790432 tatgaaaataatttgattttattttatctgttgttataaaaatagcttatacataagcacttatatgataaa 16790503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 15304422 - 15304472
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    ||||||||||||||| | |||||||||||||| ||||||| ||||||||||    
T  15304422 atatgaaaacaatttaactttattttatcttttgttatagaaatagcttat 15304472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 455
Target Start/End: Original strand, 44374720 - 44374790
Alignment:
Q  385 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataa 455  Q
    |||||||||||||| | |||||||||||||| |||| ||  ||||||||| |||||||||| || ||||||    
T  44374720 tatgaaaacaatttgactttattttatcttttgttaaagatatagcttatacataagcacttatatgataa 44374790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 1395666 - 1395605
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    ||||||||| ||||| | |||||||||||||| ||||||| |||||||||| |||| |||||    
T  1395666 atatgaaaataatttgactttattttatcttttgttatagaaatagcttatacatatgcact 1395605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 24235776 - 24235857
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    ||||| |||||||| ||||||| |||| ||||| || |||  || |||| |||||||||| ||||| |||||||||||||||    
T  24235776 tttatattatcttttgttatagaaataacttatacacaagtgcttatgttataaacacttaattaagttgtttatccaaaca 24235857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 25964419 - 25964338
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    |||||||||||||| ||||||  |||||||||| || ||| ||| || |||||| ||||| ||||| |||||||||| ||||    
T  25964419 tttattttatcttttgttataaaaatagcttatacaaaagaacttatatgataagcacttaattaagttgtttatcccaaca 25964338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 41159086 - 41159005
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    |||||||||||||| |||||||||||| ||||| |||||||||| ||  ||||| |  || ||||| ||| |||||||||||    
T  41159086 tttattttatctttagttataggaataacttatacataagcacttatacgataagcgtttaattaagttggttatccaaaca 41159005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 384 - 432
Target Start/End: Original strand, 36783409 - 36783457
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagctt 432  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||    
T  36783409 atatgaaaacaattttactttattttatcttttggtatagaaatagctt 36783457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 50211884 - 50211804
Alignment:
Q  233 tttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaataatttata 313  Q
    ||||||||||||||||| |||| ||||| ||  ||||||| |||| |||||  |||| |||||||||||||| || |||||    
T  50211884 tttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttata 50211804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 440
Target Start/End: Original strand, 2128331 - 2128382
Alignment:
Q  389 aaaacaattttattttattttatctttcgttataggaatagcttatgcataa 440  Q
    |||||||||| | |||||||||||||| ||||||| |||||||||| |||||    
T  2128331 aaaacaatttaactttattttatcttttgttatagaaatagcttatacataa 2128382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 10101551 - 10101601
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    ||||||||||||||| | |||||||||||||| ||||||| |||| |||||    
T  10101551 atatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10101601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 10212476 - 10212526
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    ||||||||||||||| | |||||||||||||| ||||||| |||| |||||    
T  10212476 atatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10212526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 36646457 - 36646507
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    |||||||||||||| || |||||||||||||| || |||| ||||||||||    
T  36646457 atatgaaaacaattatactttattttatcttttgtcatagaaatagcttat 36646507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 42809296 - 42809246
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    ||||||||||||||| | | |||||||||||| ||||||| ||||||||||    
T  42809296 atatgaaaacaatttaactatattttatcttttgttatagaaatagcttat 42809246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 401 - 483
Target Start/End: Complemental strand, 48528556 - 48528474
Alignment:
Q  401 ttttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    ||||||||||| | | ||||||| |||||||||| |||||| ||| || |||||| | ||| ||| | |||||||||||||||    
T  48528556 ttttattttatttcttgttatagaaatagcttatacataagtacttatatgataagctcttaattcagttgtttatccaaaca 48528474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 49586991 - 49587041
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    ||||||||||| ||| | |||||||||||||| ||||||| ||||||||||    
T  49586991 atatgaaaacagtttgactttattttatcttttgttatagaaatagcttat 49587041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 20192681 - 20192742
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    ||||||||||  ||| | |||||||||||||| ||||||  |||||||||| ||||||||||    
T  20192681 atatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcact 20192742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 480
Target Start/End: Original strand, 48364956 - 48365046
Alignment:
Q  386 atgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaa 480  Q
    ||||||||||||| | |||||||||||||| ||||| | |||| ||||| |||||    |||| |||||||| ||| ||||| |||| |||||||    
T  48364956 atgaaaacaatttgactttattttatcttttgttatcgaaataacttatacataa----tcatatgataaactcttaattaatttgtatatccaa 48365046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 384 - 461
Target Start/End: Original strand, 6733968 - 6734044
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 461  Q
    ||||||||||||||| | |||||||||||||||||||||  ||||| |||||||||| |||| || |||||| |||||    
T  6733968 atatgaaaacaattt-actttattttatctttcgttataaaaatagattatgcataaacacttatatgataatcactt 6734044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 13224408 - 13224363
Alignment:
Q  400 attttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||    
T  13224408 attttattttatcttttgttatagaaatagcttatacataagcact 13224363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 36157912 - 36157948
Alignment:
Q  386 atgaaaacaattttattttattttatctttcgttata 422  Q
    |||||||||||||||||||||||||||||| ||||||    
T  36157912 atgaaaacaattttattttattttatcttttgttata 36157948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 445
Target Start/End: Original strand, 7096220 - 7096263
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    |||||||||||||| ||||||| |||||||||| ||||||||||    
T  7096220 tttattttatcttttgttatagaaatagcttatacataagcact 7096263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Complemental strand, 10363743 - 10363696
Alignment:
Q  386 atgaaaacaattttattttattttatctttcgttataggaatagctta 433  Q
    ||||||||||||| | |||||||||||||| ||||||| |||||||||    
T  10363743 atgaaaacaatttaactttattttatcttttgttatagaaatagctta 10363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 461
Target Start/End: Original strand, 20982228 - 20982287
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 461  Q
    ||||||||||| || ||||||| |||||||||| |||||||||| || |||||| |||||    
T  20982228 tttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcactt 20982287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 437 - 483
Target Start/End: Original strand, 1084234 - 1084280
Alignment:
Q  437 ataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    ||||||||| || |||||||||||| ||||| |||||||||||||||    
T  1084234 ataagcacttatatgataaacacttaattaagttgtttatccaaaca 1084280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 461
Target Start/End: Original strand, 9202823 - 9202901
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcat-gtgataaacactt 461  Q
    ||||||||||||||| | |||||||||||||| | || || ||||||||||  ||||||||| ||  ||||||||||||    
T  9202823 atatgaaaacaatttaactttattttatcttttgctacagaaatagcttatatataagcacttatcatgataaacactt 9202901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 12407738 - 12407792
Alignment:
Q  386 atgaaaacaattttattttattttatctttcgttataggaatagcttatgcataa 440  Q
    |||||||||  |||| |||||||||||||| ||||||| |||||||||| |||||    
T  12407738 atgaaaacagatttactttattttatcttttgttatagaaatagcttatacataa 12407792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 401 - 455
Target Start/End: Complemental strand, 26516276 - 26516222
Alignment:
Q  401 ttttattttatctttcgttataggaatagcttatgcataagcactcatgtgataa 455  Q
    ||||||||||||||| ||| ||| |||||||||| |||||||||| || ||||||    
T  26516276 ttttattttatcttttgttttagaaatagcttatacataagcacttatatgataa 26516222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 429
Target Start/End: Complemental strand, 12975342 - 12975297
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatag 429  Q
    ||||||||||||||| ||||||||||||  || |||||||||||||    
T  12975342 atatgaaaacaatttgattttattttattctttgttataggaatag 12975297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 39128627 - 39128574
Alignment:
Q  391 aacaattttattttattttatctttcgttataggaatagcttatgcataagcac 444  Q
    |||||||| | |||||||||||||| ||||||| | |||||||| |||||||||    
T  39128627 aacaatttgactttattttatcttttgttatagaattagcttatacataagcac 39128574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 384 - 461
Target Start/End: Original strand, 40304129 - 40304206
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 461  Q
    ||||||||||||| | |||||||||||||||| ||||||  |||||||||| | |||||| | || ||||||||||||    
T  40304129 atatgaaaacaatgtgattttattttatcttttgttatataaatagcttatacctaagcaataatatgataaacactt 40304206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 443
Target Start/End: Complemental strand, 172323 - 172277
Alignment:
Q  397 tttattttattttatctttcgttataggaatagcttatgcataagca 443  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  172323 tttattttattttatctttagttatagaaatagcttatacataagca 172277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 346
Target Start/End: Original strand, 10199330 - 10199445
Alignment:
Q  234 ttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaataatttat---attttcatccgttgtttt 330  Q
    ||||||| ||||||||||||| ||||| ||  ||||||| |||||| |||| |||  |||||| |||||||||  ||||   || |||||  ||||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgtttt 10199429  T
Q  331 caacttattttcataa 346  Q
    || |||||||||||||    
T  10199430 cagcttattttcataa 10199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 50319286 - 50319230
Alignment:
Q  385 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataag 441  Q
    ||||||||||| || | |||||||||||||| ||||||| |||||||||| ||||||    
T  50319286 tatgaaaacaacttgactttattttatcttttgttatagaaatagcttatacataag 50319230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 37476583 - 37476477
Alignment:
Q  20 cacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttcccacttttggatgatgtattcttgccaacaagctccctgcatttttt 119  Q
    ||||||| || |||||||| ||||| ||||| || ||||| ||||| ||||| ||||| | ||||||    | || ||||| |||||||||||||||||     
T  37476583 cacatgccaacgttccagaacccatgtcaaaacagtttaataatgtgaactttccactctgggatgacccctcctcgccaataagctccctgcatttttc 37476484  T
Q  120 agctgaa 126  Q
    |||||||    
T  37476483 agctgaa 37476477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 37841989 - 37841943
Alignment:
Q  388 gaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    ||||||||||| | ||||||||||| || ||||||||||||||||||    
T  37841989 gaaaacaatttaactttattttatcatttgttataggaatagcttat 37841943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 459
Target Start/End: Original strand, 38651485 - 38651559
Alignment:
Q  385 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacac 459  Q
    |||||||||||||  | |||| ||||||||| ||||||| | |||||||| |||||||||| |  ||||||||||    
T  38651485 tatgaaaacaattcgactttagtttatcttttgttatagaattagcttatacataagcacttacatgataaacac 38651559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 37416957 - 37416904
Alignment:
Q  230 ctatttggattaacttatttgagctcatctaatagtataagcatttgtgagact 283  Q
    |||||| |||||||||||||||||| ||||| | | |||||||| |||||||||    
T  37416957 ctatttagattaacttatttgagcttatctagtggcataagcatctgtgagact 37416904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 475
Target Start/End: Original strand, 40357963 - 40358052
Alignment:
Q  386 atgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgttta 475  Q
    ||||||||||||| | |||||||||||  | ||||||| |||||||||| ||||  |||| || | |||| ||||| ||||| |||||||    
T  40357963 atgaaaacaatttgactttattttatccattgttatagaaatagcttatacatagtcacttatataataagcacttaattaatttgttta 40358052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 457
Target Start/End: Original strand, 44032074 - 44032147
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaac 457  Q
    ||||||||||||||| | ||||||||| |||| ||||||| ||  |||||| ||||| |||| || ||||||||    
T  44032074 atatgaaaacaatttgactttattttagcttttgttatagaaacggcttatacataaacacttatatgataaac 44032147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 45769692 - 45769733
Alignment:
Q  248 ttgagctcatctaatagtataagcatttgtgagactaattga 289  Q
    ||||||| ||||| |||||||||||||||||||||| |||||    
T  45769692 ttgagcttatctactagtataagcatttgtgagacttattga 45769733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 47877117 - 47877080
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttat 421  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  47877117 atatgaaaacaatttgattttattttatcttttgttat 47877080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 458
Target Start/End: Original strand, 48748659 - 48748731
Alignment:
Q  385 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaaca 458  Q
    |||||||||||||| | ||||||| |||||| | ||||| |||||||||| |||||||||  || |||||||||    
T  48748659 tatgaaaacaatttaactttatttcatcttttg-tatagaaatagcttatacataagcacatatatgataaaca 48748731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 384 - 454
Target Start/End: Original strand, 1810378 - 1810445
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgata 454  Q
    |||||||||||||   |||||||||||||||| ||||||| |||||||| |||||||||||| || |||||    
T  1810378 atatgaaaacaat---attttattttatcttttgttatagaaatagcttttgcataagcacttatatgata 1810445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 29274304 - 29274363
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagca 443  Q
    ||||||||||||||| | |||||||||||||| | ||||| |||||||||| ||||||||    
T  29274304 atatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagca 29274363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 281923 - 281973
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    |||||||||||| || | |||||||||||||| ||||||||||||||||||    
T  281923 atatgaaaacaagttgactttattttatcttttgttataggaatagcttat 281973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 454
Target Start/End: Original strand, 10452435 - 10452505
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgata 454  Q
    ||||||||| | ||| |||||||||||| ||| ||||||| |||||||||| |||||||||| || |||||    
T  10452435 atatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataagcactgatatgata 10452505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 24782054 - 24782004
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    ||||||||||||||| |||| ||||||||||| ||||||| ||||||||||    
T  24782054 atatgaaaacaatttgatttgattttatcttttgttatagaaatagcttat 24782004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 4006709 - 4006648
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    |||| |||||||||| | ||||||||||| || ||||||| |||| ||||||||||||||||    
T  4006709 atataaaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcact 4006648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 406 - 483
Target Start/End: Original strand, 4247731 - 4247808
Alignment:
Q  406 ttttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    |||||||||| ||||||| |||||||||| |||||||||| |  |||||||||||  ||  || ||||||||||||||    
T  4247731 ttttatcttttgttatagaaatagcttatacataagcacttacatgataaacactcaatcgaactgtttatccaaaca 4247808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 477
Target Start/End: Complemental strand, 8010319 - 8010259
Alignment:
Q  417 gttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatc 477  Q
    ||||||| |||||||||| | |||||||| || |||||||||||| ||||| |||||||||    
T  8010319 gttatagaaatagcttatacctaagcacttatatgataaacacttaattaagttgtttatc 8010259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 26559159 - 26559231
Alignment:
Q  232 atttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaa 304  Q
    ||||||||||||||||||||| | | ||| | | ||||||||||||||||||  |||  ||||||||||||||    
T  26559159 atttggattaacttatttgagtttacctactggcataagcatttgtgagactgtttggaagaacttatgaaaa 26559231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 483
Target Start/End: Original strand, 9668060 - 9668159
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    ||||||||||||||  | | ||| |||||||| ||||||  ||||||||||  |||||| || |||| |||| |  || |||||||||||||||||||||    
T  9668060 atatgaaaacaattcgactctatgttatcttttgttatacaaatagcttatatataagcgctgatgttataagcggttaattaaattgtttatccaaaca 9668159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 9093635 - 9093689
Alignment:
Q  388 gaaaacaattttattttattttatctttcgttataggaatagcttatgcataagc 442  Q
    ||||||||||| | |||||||||||||| | ||||| |||||||||| |||||||    
T  9093635 gaaaacaatttaactttattttatcttttgatatagaaatagcttatccataagc 9093689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 30537021 - 30537067
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagc 430  Q
    |||||||||||| || |||||||||||||||| ||||||| ||||||    
T  30537021 atatgaaaacaaattaattttattttatcttttgttatagaaatagc 30537067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 12111119 - 12111066
Alignment:
Q  230 ctatttggattaacttatttgagctcatctaatagtataagcatttgtgagact 283  Q
    ||||||||||| ||||||||||||| ||||| ||| ||||||| ||| ||||||    
T  12111119 ctatttggattgacttatttgagcttatctactagcataagcacttgcgagact 12111066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 476
Target Start/End: Original strand, 27889937 - 27890010
Alignment:
Q  403 ttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttat 476  Q
    ||||||||||| | ||||||| |||| ||| | ||||||||||||| |||||||  ||| ||||| ||||||||    
T  27889937 ttattttatctgttgttatagaaataacttgtacataagcactcatatgataaatgcttaattaagttgtttat 27890010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 400 - 484
Target Start/End: Complemental strand, 7937005 - 7936921
Alignment:
Q  400 attttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaacat 484  Q
    ||||| |||||||||| ||||||| ||| | |||| |||||||||| |||| | || ||||| ||||| ||||||||||||||||    
T  7937005 attttcttttatcttttgttatagaaatggtttatacataagcacttatgttaaaagcacttaattaagttgtttatccaaacat 7936921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 385 - 445
Target Start/End: Original strand, 11344360 - 11344420
Alignment:
Q  385 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    |||||||||||||| | ||| |||||||||| ||||||| |||| ||||||||||||||||    
T  11344360 tatgaaaacaatttgactttcttttatcttttgttatagaaatatcttatgcataagcact 11344420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 461
Target Start/End: Complemental strand, 3673802 - 3673725
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 461  Q
    ||||||||||||||| | |||||||||| ||| ||||||| |||| || || |||||||||| || ||| ||||||||    
T  3673802 atatgaaaacaatttaactttattttatattttgttatagaaataactaatacataagcacttatatgacaaacactt 3673725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 455
Target Start/End: Complemental strand, 35809929 - 35809857
Alignment:
Q  382 aaatatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataa 455  Q
    ||||||||||||||||| |||||||||||||||| || || | |||| ||||| |||||||||| || ||||||    
T  35809929 aaatatgaaaacaatttgattttattttatcttt-gtcatggaaataacttatacataagcacttatatgataa 35809857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 384 - 484
Target Start/End: Original strand, 17952776 - 17952876
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaaca 483  Q
    ||||||||| | ||| | |||||||||||||| ||||||| ||||||||||  |||||| || || ||||||   ||| |||||||| |||| |||||||    
T  17952776 atatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataagtgctttattaaattttttaaccaaaca 17952875  T
Q  484 t 484  Q
    |    
T  17952876 t 17952876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 323 - 451
Target Start/End: Complemental strand, 25609852 - 25609724
Alignment:
Q  323 gttgttttcaacttattttcataaacttttcattataatttctgaaaacaaactatggtaaatatgaaaacaattttattttattttatctttcgttata 422  Q
    ||||||||||| || ||| | ||||||||  | |||||||||| |||||||  ||| |   ||| ||||| || || | ||||||||||||||  |||||    
T  25609852 gttgttttcaatttctttccttaaactttctagtataatttctaaaaacaacttatagcttatacgaaaataaattgactttattttatcttttcttata 25609753  T
Q  423 ggaatagcttatgcataagcactcatgtg 451  Q
    | |||||||||| |||||||||| |||||    
T  25609752 gaaatagcttatacataagcacttatgtg 25609724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 36114603 - 36114659
Alignment:
Q  389 aaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    |||||||||| | |||||||||||||| ||||||| | ||| |||||||||||||||    
T  36114603 aaaacaatttaactttattttatcttttgttatagaactaggttatgcataagcact 36114659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 459
Target Start/End: Original strand, 18962113 - 18962188
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacac 459  Q
    ||||||||||| ||| | |||||||||||||| ||||||  ||||||| || |||||||||| |  ||||||||||    
T  18962113 atatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagcacttacatgataaacac 18962188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 656856 - 656902
Alignment:
Q  388 gaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    ||||||||||| ||| |||||||||||| ||||||| ||||||||||    
T  656856 gaaaacaatttgattatattttatcttttgttatagaaatagcttat 656902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 461
Target Start/End: Original strand, 11393440 - 11393518
Alignment:
Q  384 atatgaaaac-aattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 461  Q
    |||||||||| ||||| | |||||| ||||||| | ||||| ||||||||||  ||||||||| || ||||||||||||    
T  11393440 atatgaaaacgaatttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacactt 11393518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 461
Target Start/End: Original strand, 11410101 - 11410179
Alignment:
Q  384 atatgaaaac-aattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 461  Q
    |||||||||| ||||| | |||||| ||||||| | ||||| ||||||||||  ||||||||| || ||||||||||||    
T  11410101 atatgaaaacgaatttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacactt 11410179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 15370244 - 15370294
Alignment:
Q  233 tttggattaacttatttgagctcatctaatagtataagcatttgtgagact 283  Q
    |||||||| ||||||||||||| ||||| | | ||||||||||||||||||    
T  15370244 tttggattgacttatttgagcttatctactggcataagcatttgtgagact 15370294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 32098384 - 32098442
Alignment:
Q  385 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagca 443  Q
    |||||||||| ||| | |||||||||||||| ||||||| ||||||||||  |||||||    
T  32098384 tatgaaaacactttgactttattttatcttttgttatagaaatagcttatatataagca 32098442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 40837503 - 40837553
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 434  Q
    ||||||||||||||| | |||| ||||||||| ||||||| ||||||||||    
T  40837503 atatgaaaacaatttgactttaatttatcttttgttatagaaatagcttat 40837553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 5133749 - 5133708
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagca 443  Q
    |||||||||||||| ||||||| |||||||||| ||||||||    
T  5133749 tttattttatcttttgttatagaaatagcttatacataagca 5133708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 28902072 - 28902011
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    ||||||||||| ||| ||||||||||| |||  ||||||  |||||||||| ||||||||||    
T  28902072 atatgaaaacagtttaattttattttaacttatgttataaaaatagcttatacataagcact 28902011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 461
Target Start/End: Complemental strand, 35459901 - 35459828
Alignment:
Q  388 gaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 461  Q
    ||||||||||| | |||||||||||||| | ||||  |||||||||| || || |||| || ||||||||||||    
T  35459901 gaaaacaatttgactttattttatcttttggtatacaaatagcttatacaaaatcacttatatgataaacactt 35459828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 27571 - 27510
Alignment:
Q  384 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 445  Q
    ||||||||||||||| | |||||||||||||  ||||||| |||| ||||| ||||||||||    
T  27571 atatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcact 27510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 402 - 454
Target Start/End: Original strand, 1167 - 1219
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgata 454  Q
    |||||||||||||| ||||||| |||||||||| |||||||||| || |||||    
T  1167 tttattttatcttttgttatagaaatagcttatacataagcacttatatgata 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 2808 - 2756
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgata 454  Q
    |||||||||||||| ||||||| |||||||||| |||||||||| || |||||    
T  2808 tttattttatcttttgttatagaaatagcttatacataagcacttatatgata 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 402 - 444
Target Start/End: Original strand, 160065 - 160107
Alignment:
Q  402 tttattttatctttcgttataggaatagcttatgcataagcac 444  Q
    |||||||||||||| | ||||||||||| ||||||||||||||    
T  160065 tttattttatcttttgctataggaatagtttatgcataagcac 160107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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