View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_21 (Length: 429)
Name: NF17897_low_21
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 43224197 - 43223779
Alignment:
| Q |
1 |
ttgctattctggacctttgattcatgcttttcatctacgtgcttctccaaaatgtgattgagttagtgcaaggcttgatatagcatatgatgtaagtgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224197 |
ttgctattctggacctttgattcatgcttttcatctacgtgcttctgcaaaatgtcattgagttagtgcaaggcttgatatagcatatgatgtaagtgaa |
43224098 |
T |
|
| Q |
101 |
gtgaggaccaaatatgccaagaaccacgatagagcatcatcatatagaagcaattgatagggatggatcagaataagttaatgttattgttatccaatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43224097 |
gtgaggaccaaatatgccaagaaccacgatagagcatcatcatatagaagcaattgatagggatggttcagaataagttaatgttattgttatccaatgt |
43223998 |
T |
|
| Q |
201 |
ggttgatgggttgcagtcttctaaaaggacggcaatttaacaaggtataccacatgggcatgttctgttatctccacgtgtttcagaaaacgagaaccct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43223997 |
ggttgatgggttgcagtcttctaaaaggacggcaatttaacaaggtataccacatgggcatgttctgttatctccacgtgtttcagaaaacgagaaccct |
43223898 |
T |
|
| Q |
301 |
cgatgtcactagtttgactttggtctctggaatctgtgttatagtagtactaggagttgtctattcttctccttaattgtcatttttcaaattgagattc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43223897 |
cgatgtcactagtttgactttggtctctggaatctgtgttatagtagtactaggagttgtctattcttctccttaattgtcatttttcaaattgagattc |
43223798 |
T |
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| Q |
401 |
tcagaagacagtgcctttg |
419 |
Q |
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||||||||||||||||||| |
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| T |
43223797 |
tcagaagacagtgcctttg |
43223779 |
T |
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