View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_22 (Length: 427)
Name: NF17897_low_22
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 21522123 - 21521714
Alignment:
| Q |
1 |
tgtgctcatagacttgatgattgatataaccctcaaaacaacccataaatttgaatgaccgcatatatggagcggatatctgaacttttaaatgtttaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21522123 |
tgtgctcatagacttgatgattgatataaccctcaaaacaacccataaatttaaatgaccgcatatacggagcggatatctgaacttttaaatgtttaag |
21522024 |
T |
|
| Q |
101 |
atccgcaaagtgatacatgattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccaattactttgcaatcgtcgatgactaaa |
200 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21522023 |
atccgcaaagtgatacatgattgttagactggaaaatgtatcaccagatataacaagtattttgtcatctccaattactttgcaatcgtcgatgactaaa |
21521924 |
T |
|
| Q |
201 |
gtactaagcttcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaatatgtcttaaacaacagtttgctaactctggaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
21521923 |
gtactaagcttcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaatagtttgctaactctggaa |
21521824 |
T |
|
| Q |
301 |
ggtctagagtttctggaagttttacttcccattcacatctataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtag |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21521823 |
ggtctagagtttctggaagttttacttcacattcacatctataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtag |
21521724 |
T |
|
| Q |
401 |
ggtattactt |
410 |
Q |
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|||||||| |
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| T |
21521723 |
catattactt |
21521714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 111 - 410
Target Start/End: Complemental strand, 21537734 - 21537435
Alignment:
| Q |
111 |
tgatacatgattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccaattactttgcaatcgtcgatgactaaagtactaagct |
210 |
Q |
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|||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
21537734 |
tgatacataattgttagactagaaagtatatcaccggatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagct |
21537635 |
T |
|
| Q |
211 |
tcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaatatgtcttaaacaacagtttgctaactctggaaggtctagagt |
310 |
Q |
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|||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
21537634 |
tcttacattttaagaaaggcatagcataatctttgtcattagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatctatagt |
21537535 |
T |
|
| Q |
311 |
ttctggaagttttacttcccattcacatctataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtagggtattactt |
410 |
Q |
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|||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21537534 |
ttctggaagttttacttcccatccatatgtataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagtagggtattactt |
21537435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 76 - 236
Target Start/End: Original strand, 20426288 - 20426448
Alignment:
| Q |
76 |
atatctgaacttttaaatgtttaagatccgcaaagtgatacatgattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccaat |
175 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||||| ||| | || ||||| ||||||||| |||||||||||||| ||| ||||||||||||| || |
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| T |
20426288 |
atatctgaagttttaaatgtttacaatcaacaaagtcatatctaatagttaggctagaaagtctatcaccagatatacaaagaattttgtcatctctgat |
20426387 |
T |
|
| Q |
176 |
tactttgcaatcgtcgatgactaaagtactaagcttcttacattttaagaaaggcgtagca |
236 |
Q |
| |
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|| |||| ||| || |||| ||||||||||| |||||||||||||||||||||| ||||| |
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| T |
20426388 |
taatttgaaattctcaatgaataaagtactaaacttcttacattttaagaaaggcttagca |
20426448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 267
Target Start/End: Complemental strand, 20427758 - 20427560
Alignment:
| Q |
68 |
tggagcggatatctgaacttttaaatgtttaagatccgcaaagtgatacatgattgttagactagaaagtgtatcaccagatataacaagtattttgtca |
167 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||| |||| ||| | || |||||||| |||||| ||| | || ||||| || |||| |||| |
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| T |
20427758 |
tggagcagatatctgaacttttaaatgtttacaatcaacaaaaccatatctaatagttagacttgaaagtctattagcatatatacagagaattt-gtca |
20427660 |
T |
|
| Q |
168 |
tctccaattactttgcaatcgtcgatgactaaagtactaagcttcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaa |
267 |
Q |
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||| |||| |||| ||| ||| |||| ||||||| |||||||||||||||| ||||||||| ||||| || | |||| |||| ||||||||| ||||| |
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| T |
20427659 |
tctttgattaatttgaaattgtcaatgaataaagtattaagcttcttacatttcaagaaaggcttagcacaaccattgctatcatccaaagtaattgtaa |
20427560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 21537815 - 21537734
Alignment:
| Q |
15 |
tgatgattgatataaccctcaaaacaacccataaatttgaatgaccgcatatatggagcggatatctgaacttttaaatgtt |
96 |
Q |
| |
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|||||||| |||||||||| ||| |||| |||| ||||||||| || ||||||||| |||||||||||| || |||||| |
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| T |
21537815 |
tgatgattaatataacccttaaacgcacccttaaaactgaatgacctcacatatggagcagatatctgaactcttgaatgtt |
21537734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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