View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_23 (Length: 427)
Name: NF17897_low_23
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_23 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: scaffold0223 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 671 - 1076
Alignment:
| Q |
1 |
cttggaccacttaaatgcttatatttgtataagatcaaaccttaaaaagagctttaagactttgaccctcatttatgagaatttgcctctgaaactcaat |
100 |
Q |
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| T |
671 |
cttggatcacttaaatgcttatatttgtataagatcaaacattagaaagggctttaagactttgaccctcatttatgagaatttgcctctgaaactcaat |
770 |
T |
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| Q |
101 |
tgtgaattaattaagagatgggattaagctttattcggtacattaagaaaataagtcatttggtttgcatggaccttttcatcatttgattgattgctaa |
200 |
Q |
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| T |
771 |
tgtgaattgattaagagatgggattaagctttattcggtacattaagaaaataagttagttggtttgcatggaccttttcatcatttgattgattgctaa |
870 |
T |
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| Q |
201 |
aaagaat--aaaaaacactaaattaacccatgttaagtttgtctgacctaaattttgagatgatatcatagcccttctaatatctattatgccacccacc |
298 |
Q |
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| T |
871 |
aaagaataaaaaaaacactaaattaacc----------gtgtctgacctaaattttaagatgatatcatagcccttctaatatctattatgccacccacc |
960 |
T |
|
| Q |
299 |
atcaggtcactcagatcatgtgccagatgtctagaacttgacgtgaggggagtgagttgagagtattacattgaataagatatgatttgaaaacatcttt |
398 |
Q |
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| T |
961 |
atcaggtcactcagatcatgcgtcagatgtttagaacttgacgtgaggggagtgagttgagagtattacattgaataagatatgacttgaaaacatcttt |
1060 |
T |
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| Q |
399 |
ataagtgggtcattcc |
414 |
Q |
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| T |
1061 |
ataagtgggtcattcc |
1076 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 705989 - 705942
Alignment:
| Q |
357 |
gagagtattacattgaataagatatgatttgaaaacatctttataagt |
404 |
Q |
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| T |
705989 |
gagagttttacattggataagatatgatttgaaaatatgtttataagt |
705942 |
T |
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