View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17897_low_24 (Length: 423)
Name: NF17897_low_24
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6240818 - 6240598
Alignment:
| Q |
1 |
acattaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattatctactacatagtgctcatcaccatcccactctcaatttttag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6240818 |
acattaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattgtctactacatagtgctcatcaccatcccactctcaatttttag |
6240719 |
T |
|
| Q |
101 |
gccaaatatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatactttgagatcaatgacaacctatgcataatcatgcttctt |
200 |
Q |
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|
||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6240718 |
gccaaatatctcctagtgttctttaaagtttaaacttggttataaatatttacttgcatactttgagatcaatgacaacctatggataatcatgcttctt |
6240619 |
T |
|
| Q |
201 |
aattggacaaatatgccgatc |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
6240618 |
aattggacaaatatgccgatc |
6240598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6211889 - 6211659
Alignment:
| Q |
1 |
acattaatgcttctaatattcttcca-------tctaacttttaagataaaaatgcttctattatctactacatagtgctcatcaccatcccactctcaa |
93 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
6211889 |
acattaatgcttctaatattcttccaagttccatctaacttctaagataaaaatgcttctattatctactacatagtgctcatcgccatcccactctcaa |
6211790 |
T |
|
| Q |
94 |
tttttaggccaaatatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatactttgagatcaatgacaacctatgcataatcat |
193 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6211789 |
tttttaggccaaatacctcctagtgttgtttaaagtttacacttagttataaatatttacttgcatactttgagatcaatgataacctatgcataatcat |
6211690 |
T |
|
| Q |
194 |
gcttcttaattggacaaatatgccgatcttc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
6211689 |
gcttcttaattggacaaatatgccgatcttc |
6211659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 223 - 408
Target Start/End: Complemental strand, 6240573 - 6240388
Alignment:
| Q |
223 |
tctagttgtccctcagttggacattttatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttc |
322 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
6240573 |
tctagttgtccctcagtttgacaatgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttc |
6240474 |
T |
|
| Q |
323 |
catgaagcactagattcttagctaaatctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttcat |
408 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
6240473 |
catgaagcattagattcttagctaaatctatggcagatttttttatcaatgagaaatgcaataggcttgcatacttctatcttcat |
6240388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 223 - 408
Target Start/End: Complemental strand, 6211637 - 6211453
Alignment:
| Q |
223 |
tctagttgtccctcagttggacattttatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttc |
322 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
6211637 |
tctagttgtcccttagttggacagtgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttc |
6211538 |
T |
|
| Q |
323 |
catgaagcactagattcttagctaaatctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttcat |
408 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6211537 |
catgaagcattagattcttagctaaatctat-gcagatttttttatcaatgagaaatgcaataggcttgcaaacttctatcttcat |
6211453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 19115828 - 19115992
Alignment:
| Q |
1 |
acattaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattatctactacatagtgctcatcaccatcccactctcaatttttag |
100 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
19115828 |
acattaatgcttctaatattcacccttctaacttttgagatgaaaatgcttctattatctactgcatagtgctcatcaccatcccactctcaatttttag |
19115927 |
T |
|
| Q |
101 |
gccaaa-tatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatacttt |
164 |
Q |
| |
|
|||||| || |||||| ||||| || ||| ||||||| |||||||||||||||| |||||| |
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|
| T |
19115928 |
gccaaattacctcctatgattctttaagttttgcacttaggaataaatatttacttgcgtacttt |
19115992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 407
Target Start/End: Original strand, 17507330 - 17507488
Alignment:
| Q |
249 |
tatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttccatg-aagcactagattcttagctaa |
347 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||| | ||||||||| || ||| |||||||||||||||| |||| || |||| ||||||| ||||| |
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|
| T |
17507330 |
tatgaccttaaacatttctttgttcacttgttctctaataaagtgaaattttgccttaatgtgtttgcttctttcatgaaaacacttgattctttgctaa |
17507429 |
T |
|
| Q |
348 |
atctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttca |
407 |
Q |
| |
|
|||||| ||| | | |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17507430 |
atctatagca-aatttattgttaatgaggaatgcaataggcttgcaaacttctatcttca |
17507488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 353
Target Start/End: Original strand, 23427927 - 23428055
Alignment:
| Q |
225 |
tagttgtccctcagttggacattttatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttcca |
324 |
Q |
| |
|
||||||| ||||| | ||||| | ||||| ||||||||||| || |||||||||||||||| | ||||||||| || |||| |||||||| ||||| || |
|
|
| T |
23427927 |
tagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgaca |
23428026 |
T |
|
| Q |
325 |
tgaagcactagattcttagctaaatctat |
353 |
Q |
| |
|
|| | |||| | || |||||||||||||| |
|
|
| T |
23428027 |
tgcaacacttggtttttagctaaatctat |
23428055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 1833998 - 1833919
Alignment:
| Q |
271 |
ttcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttccatgaagcactagattcttagctaaatc |
350 |
Q |
| |
|
||||| |||||||| | |||||||||||| |||||||||||||| ||||| |||| | |||| |||||||||| ||||| |
|
|
| T |
1833998 |
ttcacatgttctcttataaagtgaaatcttgcctcaatgtgtttgtttctttcatgcaacactggattcttagccaaatc |
1833919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 19610165 - 19609982
Alignment:
| Q |
1 |
acattaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattatctactacatagtgct---catcaccatcccactctcaatttt |
97 |
Q |
| |
|
||||| ||| ||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| |
|
|
| T |
19610165 |
acattgatgtttctaatattccctcttctaacttttgagataaaaatgcttctattatctactgcatagtgctcaacatcatcatcccaatctcaatttt |
19610066 |
T |
|
| Q |
98 |
taggccaaatatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatactttgagatcaatgacaaccta |
182 |
Q |
| |
|
|||||| |||| ||| ||| ||| || || |||||||||||||||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
19610065 |
taggcctaatacctcttag-gttttttaagttttacacttagttataaatatttacttgcatacttttaaattgatgacaaccta |
19609982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 15489886 - 15489950
Alignment:
| Q |
289 |
aagtgaaatcttccctcaatgtgtttgcttcttccatgaagcactagattcttagctaaatctat |
353 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| | |||| |||||||||||||||||| |
|
|
| T |
15489886 |
aagtgaaatattgtctcaatgtgtttgcttcttccatgcaacactgaattcttagctaaatctat |
15489950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 16943892 - 16943965
Alignment:
| Q |
271 |
ttcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttccatgaagcactagattcttagc |
344 |
Q |
| |
|
||||| || |||||| | |||||||| ||| ||| |||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
16943892 |
ttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttctaccatgcaacactagattcttagc |
16943965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 17014557 - 17014630
Alignment:
| Q |
271 |
ttcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttccatgaagcactagattcttagc |
344 |
Q |
| |
|
||||| || |||||| | |||||||| ||| ||| |||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
17014557 |
ttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttctaccatgcaacactagattcttagc |
17014630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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