View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_25 (Length: 406)
Name: NF17897_low_25
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 14 - 388
Target Start/End: Complemental strand, 38752408 - 38752034
Alignment:
| Q |
14 |
ggtggtgcattagtgaatgagtaagagaatactataacataacaaagcataaaattagataagtagcacaaaagtctttggtttagtgtgatggctttca |
113 |
Q |
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| T |
38752408 |
ggtggtgcattagtgaatgagtaagagaatactataacataacaaagcataaaattagataagtagcacaaaagtctttggtttagtgtgatggctttca |
38752309 |
T |
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| Q |
114 |
cattagagaggtgtgaagataacatggtgttcactatggagtctcagaaatcagtgcctgctcctttcttgacaaagacataccaacttgttgatgatcc |
213 |
Q |
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| T |
38752308 |
cattagagaggtgtgaagataacatggtgttcactatggagtctcagaaatcagtgcctgctcctttcttgacaaagacataccaacttgttgatgatcc |
38752209 |
T |
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| Q |
214 |
tctcactgaccacattgtatcttggagtgatgatgaaactacatttgttgtttggaggcctcctgagtttgctagagatcttcttcccaattttttcaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752208 |
tctcactgaccacattgtatcttggagtgatgatgaaactacatttgttgtttggaggcctcctgagtttgctagagatcttcttcccaattttttcaag |
38752109 |
T |
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| Q |
314 |
cataacaacttctcaagctttgttaggcaactaaatacatatgtgagaatcttcaaattctaacttctatgttct |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752108 |
cataacaacttctcaagctttgttaggcaactaaatacatatgtgagaatcttcaaattctaacttctatgttct |
38752034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 12478780 - 12478731
Alignment:
| Q |
284 |
gctagagatcttcttcccaattttttcaagcataacaacttctcaagctt |
333 |
Q |
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| T |
12478780 |
gctagagaccttctgccgaagtttttcaagcataacaatttctcaagctt |
12478731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 333
Target Start/End: Complemental strand, 46927245 - 46927073
Alignment:
| Q |
161 |
aaatcagtgcctgctcctttcttgacaaagacataccaacttgttgatgatcctctcactgaccacattgtatcttggagtgatgatgaaactacatttg |
260 |
Q |
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|||||||| || ||||| ||| | || || ||||||||||||||||||||||| ||| || ||||| || |||||| |||| ||||| | || || | |
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| T |
46927245 |
aaatcagtcccagctccattcctcaccaaaacataccaacttgttgatgatccagccacagatcacatcgtttcttggggtgaagatgactccaccttcg |
46927146 |
T |
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| Q |
261 |
ttgtttggaggcctcctgagtttgctagagatcttcttcccaattttttcaagcataacaacttctcaagctt |
333 |
Q |
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|||||||| | |||||||| ||||||||||| || || || || | ||||| || ||||||||||| ||||| |
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| T |
46927145 |
ttgtttggcgtcctcctgaatttgctagagacctcctccctaactacttcaaacacaacaacttctctagctt |
46927073 |
T |
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