View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17897_low_26 (Length: 405)

Name: NF17897_low_26
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17897_low_26
NF17897_low_26
[»] chr1 (10 HSPs)
chr1 (11-389)||(30827016-30827380)
chr1 (12-87)||(29658792-29658867)
chr1 (12-87)||(29691307-29691382)
chr1 (12-87)||(29718819-29718894)
chr1 (15-86)||(33160702-33160773)
chr1 (93-175)||(29659026-29659108)
chr1 (23-80)||(19468340-19468397)
chr1 (20-76)||(9581276-9581332)
chr1 (20-76)||(9586844-9586900)
chr1 (93-161)||(29719053-29719121)
[»] chr6 (2 HSPs)
chr6 (15-81)||(6594439-6594505)
chr6 (286-354)||(21291473-21291541)
[»] chr5 (2 HSPs)
chr5 (286-354)||(3754378-3754446)
chr5 (286-354)||(14637273-14637341)
[»] chr4 (5 HSPs)
chr4 (286-354)||(7649948-7650016)
chr4 (21-89)||(10634273-10634341)
chr4 (24-83)||(55908567-55908626)
chr4 (23-87)||(570542-570606)
chr4 (286-354)||(11993954-11994022)
[»] chr3 (2 HSPs)
chr3 (227-354)||(51601009-51601135)
chr3 (286-354)||(29027195-29027263)
[»] chr2 (1 HSPs)
chr2 (24-83)||(1037503-1037562)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 389
Target Start/End: Complemental strand, 30827380 - 30827016
Alignment:
Q  11 taatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattgtactgatgtcacagagaagggag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30827380 taatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattgtacggatgtcacagagaagggag 30827281  T
Q  111 cgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagatcttgtgatcaagtgcaaaatcaaagttggaagaagttgaagtagttgtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30827280 cgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagatcttgtgatcaagtgcaaaatcaaagttggaagaagttgaagtagttgtg 30827181  T
Q  211 tcacaagctgctagtattaccaaatatctttataatcatttgttatgccttgtatttgatgagaaagcatacaggtggaagagaaatccttcgtcctgca 310  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||             |||||||||||    
T  30827180 tcacaagctgctagtattactaaatatctttataatca-ttgttatgccttgtatttgatgagaaagcatacaggt-------------ttcgtcctgca 30827095  T
Q  311 acaactcggtttgctactaatttcattgctttgcaaagtattttagctcaaaagaattcctcaagaggcatggtaacat 389  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30827094 ccaactcggtttgctactaatttcattgctttgcaaagtattttagctcaaaagaattcctcaagaggcatggtaacat 30827016  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 29658792 - 29658867
Alignment:
Q  12 aatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 87  Q
    |||||||||||||| |||||||| |||||||| |||| ||||||||||| ||||| ||||||||||||||||||||    
T  29658792 aatacttgagagatcaaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttgagctattg 29658867  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 29691307 - 29691382
Alignment:
Q  12 aatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 87  Q
    |||||||||||||| |||||||  |||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  29691307 aatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattg 29691382  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 29718819 - 29718894
Alignment:
Q  12 aatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 87  Q
    |||||||||||||| |||||||  |||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  29718819 aatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattg 29718894  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 33160773 - 33160702
Alignment:
Q  15 acttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctatt 86  Q
    |||||||||||||||||||| |||||||| |||  || ||||||||||||||||||||||||||||||||||    
T  33160773 acttgagagatgaaaacatcgtattgtttcctttcatgttccccaatttggaggtgcttgatttgagctatt 33160702  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 29659026 - 29659108
Alignment:
Q  93 atgtcacagagaagggagcgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagatcttgtgatcaagtg 175  Q
    ||||||||||||| ||||  || ||||| |||||||| ||||| ||||| |  ||||||||| |||||| |||||||||||||    
T  29659026 atgtcacagagaatggagtaaaacatgtggttcaaaactgcacgcaactgactgagatcaatttgagatattgtgatcaagtg 29659108  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 19468340 - 19468397
Alignment:
Q  23 gatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttga 80  Q
    |||||||||||| || ||||| |||| ||||| ||||||||| || ||||||||||||    
T  19468340 gatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttga 19468397  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 9581332 - 9581276
Alignment:
Q  20 agagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgat 76  Q
    |||||| |||||||| || ||||| |||| ||||||||||||||| || ||||||||    
T  9581332 agagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9581276  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 9586900 - 9586844
Alignment:
Q  20 agagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgat 76  Q
    |||||| |||||||| || ||||| |||| ||||||||||||||| || ||||||||    
T  9586900 agagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9586844  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 29719053 - 29719121
Alignment:
Q  93 atgtcacagagaagggagcgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagat 161  Q
    ||||||||||||| |||| ||| ||||| |||||||| ||||  ||||| | |||||||||| ||||||    
T  29719053 atgtcacagagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttgagat 29719121  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 6594439 - 6594505
Alignment:
Q  15 acttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgag 81  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||    
T  6594439 acttgaaagatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgag 6594505  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 21291541 - 21291473
Alignment:
Q  286 tggaagagaaatccttcgtcctgcaacaactcggtttgctactaatttcattgctttgcaaagtatttt 354  Q
    ||||||||| || |||||||||||  ||||||| ||||| |||||||||||||||||||| ||||||||    
T  21291541 tggaagagagatacttcgtcctgctccaactcgctttgccactaatttcattgctttgcagagtatttt 21291473  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 3754446 - 3754378
Alignment:
Q  286 tggaagagaaatccttcgtcctgcaacaactcggtttgctactaatttcattgctttgcaaagtatttt 354  Q
    ||||||||| || |||||||||||  ||||||| ||||| |||||||||||||||||||| ||||||||    
T  3754446 tggaagagagatacttcgtcctgctccaactcgctttgccactaatttcattgctttgcagagtatttt 3754378  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 14637341 - 14637273
Alignment:
Q  286 tggaagagaaatccttcgtcctgcaacaactcggtttgctactaatttcattgctttgcaaagtatttt 354  Q
    ||||||||| || |||||||||||  ||||||| ||||| |||||||||||||||||||| ||||||||    
T  14637341 tggaagagagatacttcgtcctgctccaactcgctttgccactaatttcattgctttgcagagtatttt 14637273  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 7650016 - 7649948
Alignment:
Q  286 tggaagagaaatccttcgtcctgcaacaactcggtttgctactaatttcattgctttgcaaagtatttt 354  Q
    ||||||||| || |||||||||||  ||||||| ||||| |||||||||||||||||||| ||||||||    
T  7650016 tggaagagagatacttcgtcctgctccaactcgctttgccactaatttcattgctttgcagagtatttt 7649948  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 10634273 - 10634341
Alignment:
Q  21 gagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattgta 89  Q
    |||||||| ||||| | ||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||    
T  10634273 gagatgaacacatcatgttgtttacttccatttttcccaacttggacgtgctggatttgagttattgta 10634341  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 55908567 - 55908626
Alignment:
Q  24 atgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagct 83  Q
    ||||||||||| |||||||| |||| ||||||||||||||| |  | |||||||||||||    
T  55908567 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 55908626  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 570606 - 570542
Alignment:
Q  23 gatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 87  Q
    |||||||||||  || ||||| |||||||||||||||||||| || | |||||||| || |||||    
T  570606 gatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattg 570542  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 11993954 - 11994022
Alignment:
Q  286 tggaagagaaatccttcgtcctgcaacaactcggtttgctactaatttcattgctttgcaaagtatttt 354  Q
    ||||||| ||||  |||||| |||  ||||||| ||||| |||||||||||||||||| | ||||||||    
T  11993954 tggaagataaatatttcgtcttgctccaactcgctttgccactaatttcattgctttgtagagtatttt 11994022  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 354
Target Start/End: Complemental strand, 51601135 - 51601009
Alignment:
Q  227 ttaccaaatatctttataatcatttgttatgccttgtatttgatgagaaagcatacaggtggaagagaaatccttcgtcctgcaacaactcggtttgcta 326  Q
    ||||||| ||| | |||||||||| ||||| | |||||||||||||| ||   |||   ||||||||| || ||| |||||||  ||||||| ||||| |    
T  51601135 ttaccaagtatgtatataatcatt-gttatccattgtatttgatgaggaaatttactcatggaagagagatactttgtcctgctccaactcgctttgcca 51601037  T
Q  327 ctaatttcattgctttgcaaagtatttt 354  Q
    ||||||||||||||||||| ||||||||    
T  51601036 ctaatttcattgctttgcagagtatttt 51601009  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 29027263 - 29027195
Alignment:
Q  286 tggaagagaaatccttcgtcctgcaacaactcggtttgctactaatttcattgctttgcaaagtatttt 354  Q
    ||||||||| || |||||||||||  ||||||| ||||| | |||||||||||||||||| ||||||||    
T  29027263 tggaagagagatacttcgtcctgctccaactcgctttgccagtaatttcattgctttgcagagtatttt 29027195  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 1037503 - 1037562
Alignment:
Q  24 atgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagct 83  Q
    ||||||||||| |||||||| |||| ||||||||||||||| |  | |||||||||||||    
T  1037503 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 1037562  T

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