View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_27 (Length: 404)
Name: NF17897_low_27
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 38706994 - 38706625
Alignment:
| Q |
19 |
ctattgccccagcgagagtggaggtcaagaatcaatatctgttcttgaagtgtgatatttccacgacgtacatcgggacgcaagtagtttaaccacctta |
118 |
Q |
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| T |
38706994 |
ctattgccccagcgagagtggaggtcaagaatcaatatctgttcttgaagtgtgatatttccacgacgtaaatcgggacgcaagtagtttaaccacctta |
38706895 |
T |
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| Q |
119 |
atctacaacttttaccacttctcctcaaacctgtataattaattagttttgtttagaatagattatgagaatcaataattaagctattcatgcagctatg |
218 |
Q |
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| T |
38706894 |
atctacaacttttaccacttctcctcaaacctgtataattaattagttttgtttagaatagattatgagaatcaa----taagctattcatgcagctatg |
38706799 |
T |
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| Q |
219 |
tcattataagctaataaataaaagagctagaagaaaatatataaatatatacatgcctgcagaagatgcaagggtattccagtgaccttcaccgtgtatt |
318 |
Q |
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| T |
38706798 |
tc---ataagctaataaataaaagagctagaagaaaatatataaatatatacatgcctgcagaagatgcaagggtattccagtgaccttcaccgtgtatt |
38706702 |
T |
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| Q |
319 |
gtaatgtaatcaaccagaatggtgtcctcttctaacgtccaaggaccctttcttacccctgtctcattttcctttgc |
395 |
Q |
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| T |
38706701 |
gtaatgtaatcaaccagaatggtgtcctcttctaacgtccaaggaccttttcttacccctgtctcattttcctttgc |
38706625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 27633157 - 27633197
Alignment:
| Q |
103 |
tagtttaaccaccttaatctacaacttttaccacttctcct |
143 |
Q |
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| T |
27633157 |
tagttcaaccaccttaacctacagcttttaccacttctcct |
27633197 |
T |
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