View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_31 (Length: 385)
Name: NF17897_low_31
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 35603428 - 35603060
Alignment:
| Q |
1 |
ctcccttccatggtggggcatattaagaagaccacttttgcttacctaaaacgtagaatttgtaaataagtgtcaattttgaagtgttggattctttctc |
100 |
Q |
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| T |
35603428 |
ctcccttccatggtggggcatattaagaagaccactttcgcttacctaaaacgtagaatttgtaaataagtgtcaattttgaagtgttggattctttctc |
35603329 |
T |
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| Q |
101 |
gcgttggaaagaaaatcttaattaaatctgttactcaggaatcatgccgtatatgtatggatcttctcaaggaaccctatatcatgcaaagtatcactca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35603328 |
gcgttggaaagaaaatcttaattaaatctgttactcaggaatcatgccgtatatgtatggatcttctcaaggaaccctatatcatgcaaagtatcactca |
35603229 |
T |
|
| Q |
201 |
catgagtatcatatgaaatttgatgatttcgcctcgggttcaaacatttctttggcgtttagcccaccaatgcttgcagactcgtgccaaactcatcacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35603228 |
catgagtatcatatgaaatttgatgatttcgcctcgggttcaaacatttctttggcgtttagcccaccaatgcttgcagactcgtgccaaactcatcacc |
35603129 |
T |
|
| Q |
301 |
cacatatgccatgtgacgatatttgtgtatattgtgagaaacttctggaaacccatatgcacactttct |
369 |
Q |
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||||||||||||||||| || ||||||||| || |||||||||| |||||||||||||||||||||||| |
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| T |
35603128 |
cacatatgccatgtgacaatgtttgtgtatcttctgagaaacttgtggaaacccatatgcacactttct |
35603060 |
T |
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