View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_33 (Length: 375)
Name: NF17897_low_33
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 37212371 - 37212007
Alignment:
| Q |
1 |
cctatggttgaggaagtaacaaatgagaatcatatgaagtgtatttcaaggactggatgttcatccccatcctttagcctcaaactaactcaactggttt |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37212371 |
cctatggttgaggatgtaacaaatgagaatcatatgaagtgtatttcaaggactggatgttcatccccatcctttagcctcaaactaactcaactggttt |
37212272 |
T |
|
| Q |
101 |
ccatggcgggagcggaagatgatgaggtggattctgaaatgcaaagccagcctgaggacatggttagtatatatcaagtgaagccagaatttatgtcgat |
200 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37212271 |
ccatggcgggagcggaagatgatgaggttgattctgaaatgcaaagccagcctgaggacatggttaatatatatcaagtgaagccagaatttatgtcgat |
37212172 |
T |
|
| Q |
201 |
attaagaaaaattatcggcaaacatggagatattaccaagaattgtgtgacaaagtcgatgaaatttcgttcagctttcttggatacgatctgtgaaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37212171 |
attaagaaaaattatcggcaaacatggagatattaccaagaattgtgtgacaaagtcggtgaaatttcgttcagctttcttggatacgatctgtgaaata |
37212072 |
T |
|
| Q |
301 |
atatcagatttggacaaaaaggatattgctaacatcaaaggaaatgacctgaaaattaagatcgg |
365 |
Q |
| |
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| T |
37212071 |
atatcagatttggacaaaaaggatattgctaacatcaaaggaaatgacctgaaaattaagatcgg |
37212007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 32 - 321
Target Start/End: Complemental strand, 37183900 - 37183608
Alignment:
| Q |
32 |
atatgaagtgtatttcaaggactggatgttcatccccatcctttagcctcaaactaactcaactggtttccatggcgggagcggaagatg---atgaggt |
128 |
Q |
| |
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| T |
37183900 |
atatgaagtctatttcaagggctggatgtctatccccatcttttagcctcaaactaactgaagtggttgacatggtcagaaatgaagatggtgatgaggt |
37183801 |
T |
|
| Q |
129 |
ggattctgaaatgcaaagccagcctgaggacatggttagtatatatcaagtgaagccagaatttatgtcgatattaagaaaaattatcggcaaacatgga |
228 |
Q |
| |
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||||| | | | ||||| ||||||||| | | ||| | ||| |||||||| || ||||||||| |||| ||||||||||||||||| || |||||| |
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| T |
37183800 |
tgattcaaatgtacgaagccggcctgaggatacgattaatggataccaagtgaaaccggaatttatgccgatgttaagaaaaattatcggtaagcatgga |
37183701 |
T |
|
| Q |
229 |
gatattaccaagaattgtgtgacaaagtcgatgaaatttcgttcagctttcttggatacgatctgtgaaataatatcagatttggacaaaaag |
321 |
Q |
| |
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| T |
37183700 |
gatattgctaagaattgcttggcaaagtctgtaaaattccgttcggtgttgttggagatgatctgtggaattatatcagatttggacgaaaag |
37183608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 32 - 321
Target Start/End: Complemental strand, 37195032 - 37194740
Alignment:
| Q |
32 |
atatgaagtgtatttcaaggactggatgttcatccccatcctttagcctcaaactaactcaactggtttccatggcgggagcggaagatg---atgaggt |
128 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||||||| |||||||||||||||||| || ||||| ||||| || ||||||| ||||||| |
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| T |
37195032 |
atatgaagtctatttcaagggctggatgtctatccccatcttttagcctcaaactaactgaagtggttgacatggtcagaaatgaagatggtgatgaggt |
37194933 |
T |
|
| Q |
129 |
ggattctgaaatgcaaagccagcctgaggacatggttagtatatatcaagtgaagccagaatttatgtcgatattaagaaaaattatcggcaaacatgga |
228 |
Q |
| |
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||||| | | | ||||| ||||||||| | | ||| | ||| |||||||| || ||||||||| |||| ||||||||||||||||| || |||||| |
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| T |
37194932 |
tgattcaaatgtacgaagccggcctgaggatacgattaatggataccaagtgaaaccggaatttatgccgatgttaagaaaaattatcggtaagcatgga |
37194833 |
T |
|
| Q |
229 |
gatattaccaagaattgtgtgacaaagtcgatgaaatttcgttcagctttcttggatacgatctgtgaaataatatcagatttggacaaaaag |
321 |
Q |
| |
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|||||| | |||||||| || ||||||| | ||||| ||||| | || ||||| | |||||||| ||| ||||||||||||||| ||||| |
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| T |
37194832 |
gatattgctaagaattgcttggcaaagtctgtaaaattccgttcggtgttgttggagatgatctgtggaattatatcagatttggacgaaaag |
37194740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 355
Target Start/End: Complemental strand, 37217782 - 37217678
Alignment:
| Q |
251 |
caaagtcgatgaaatttcgttcagctttcttggatacgatctgtgaaataatatcagatttggacaaaaaggatattgctaacatcaaaggaaatgacct |
350 |
Q |
| |
|
||||||| |||||| |||||| | || ||||| |||||||||| |||||||||||| ||| |||||| ||| || ||| |||||||||||||||||| |
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| T |
37217782 |
caaagtcagtgaaatggcgttcaacattgttggagacgatctgtggaataatatcagagctggtcaaaaatgatgttactagcatcaaaggaaatgacct |
37217683 |
T |
|
| Q |
351 |
gaaaa |
355 |
Q |
| |
|
||||| |
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|
| T |
37217682 |
gaaaa |
37217678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 264
Target Start/End: Complemental strand, 37180768 - 37180623
Alignment:
| Q |
118 |
gatgatgaggtggattctgaaatgcaaagccagcctgaggacatggttagtatatatcaagtgaagccagaatttatgtcgatattaagaaaaattatcg |
217 |
Q |
| |
|
||||||||||| | || ||||| |||||||| ||||| |||| ||| | |||| ||||||||| |||||| ||| | | |||||||||||||||| |
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|
| T |
37180768 |
gatgatgaggttcagtcggaaattcaaagccaacctgatgacactgtttatggatatgaagtgaagctagaattcatgcctacattaagaaaaattatca |
37180669 |
T |
|
| Q |
218 |
gcaaacatggagatattaccaagaattgtgtgacaaagtcgatgaaa |
264 |
Q |
| |
|
|||| ||||||||||| | ||||| ||||||||||||||| ||||| |
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| T |
37180668 |
gcaagcatggagatatagctaagaa-tgtgtgacaaagtcggtgaaa |
37180623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 413884 - 413938
Alignment:
| Q |
36 |
gaagtgtatttcaaggactggatgttcatccccatcctttagcctcaaactaact |
90 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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|
| T |
413884 |
gaagtgtatttcaagggctggatgttcatccccgtcctttagcctcaaactaact |
413938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 5365158 - 5365236
Alignment:
| Q |
171 |
atatcaagtgaagccagaatttatgtcgatattaagaaaaattatcggcaaacatggagatattaccaagaattgtgtg |
249 |
Q |
| |
|
|||| |||||||||||||||| ||| | ||||||||||||||||||| ||| |||||| ||||| | |||||||||||| |
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|
| T |
5365158 |
atataaagtgaagccagaattcatgcctatattaagaaaaattatcgacaagcatggatatatttctaagaattgtgtg |
5365236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 258
Target Start/End: Complemental strand, 5366619 - 5366503
Alignment:
| Q |
142 |
caaagccagcctgaggacatggttagtatatatcaagtgaagccagaatttatgtcgatattaagaaaaattatcggcaaacatggagatattaccaaga |
241 |
Q |
| |
|
|||||||| ||||| |||| |||| || |||| |||||||||||||||| ||| |||||||||||||||| || ||| |||| ||||||| | |||| |
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|
| T |
5366619 |
caaagccaacctgaagacacggtttatagatatgaagtgaagccagaattcatgcgtatattaagaaaaattaccgtcaagcatgaagatatttctaaga |
5366520 |
T |
|
| Q |
242 |
attgtgtgacaaagtcg |
258 |
Q |
| |
|
|||||||| ||| |||| |
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|
| T |
5366519 |
attgtgtggcaaggtcg |
5366503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 5366845 - 5366952
Alignment:
| Q |
142 |
caaagccagcctgaggacatggttagtatatatcaagtgaagccagaatttatgtcgatattaagaaaaattatcggcaaacatggagatattaccaaga |
241 |
Q |
| |
|
|||||||||||||| |||| |||| | ||| |||||||||||||||| ||| | |||||||||||||||| | |||| ||| || ||||| | |||| |
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|
| T |
5366845 |
caaagccagcctgaagacacggtttatcgatacgaagtgaagccagaattcatgcctatattaagaaaaattaccagcaagcattgatatatttctaaga |
5366944 |
T |
|
| Q |
242 |
attgtgtg |
249 |
Q |
| |
|
|||||||| |
|
|
| T |
5366945 |
attgtgtg |
5366952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 20451334 - 20451392
Alignment:
| Q |
206 |
gaaaaattatcggcaaacatggagatattaccaagaattgtgtgacaaagtcgatgaaa |
264 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | |||||||||||| ||| |||||||||| |
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|
| T |
20451334 |
gaaaaattatcggcaagcattgagatatttctaagaattgtgtggcaacgtcgatgaaa |
20451392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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