View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17897_low_35 (Length: 356)

Name: NF17897_low_35
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17897_low_35
NF17897_low_35
[»] chr8 (10 HSPs)
chr8 (13-143)||(30649095-30649225)
chr8 (208-338)||(30648903-30649030)
chr8 (12-143)||(26089440-26089571)
chr8 (208-338)||(26089245-26089375)
chr8 (257-336)||(14727777-14727856)
chr8 (256-335)||(15329873-15329952)
chr8 (256-335)||(15510242-15510321)
chr8 (256-335)||(28865967-28866046)
chr8 (256-333)||(29552811-29552888)
chr8 (272-330)||(28693166-28693225)
[»] chr7 (2 HSPs)
chr7 (296-338)||(6610910-6610952)
chr7 (76-125)||(6610681-6610730)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 30649225 - 30649095
Alignment:
Q  13 tgaaccaaaaaggactaataaaatcacggaattgacatatgtaggggatatcctccacatagaaaataaataactagcggtaaaccaacccattggagaa 112  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30649225 tgaaccaaaaaggacgaataaaatcacggaattgacatgtgtaggggatatcctccacatagaaaataaataactagcggtaaaccaacccattggagaa 30649126  T
Q  113 cccactagaaagcatatttttccatatggta 143  Q
    |||||||||||||||||||||||||||||||    
T  30649125 cccactagaaagcatatttttccatatggta 30649095  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 208 - 338
Target Start/End: Complemental strand, 30649030 - 30648903
Alignment:
Q  208 gaattcataccctgacaaaactgatttcccagcatttcctgggtgggcagaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcacta 307  Q
    ||||||||| |||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30649030 gaattcataacctgacaagactgatttcccagcatttcctggg---gcagaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcacta 30648934  T
Q  308 acctgataaattccaccagggggactcaatc 338  Q
    |||||||||||||||||||||||||||||||    
T  30648933 acctgataaattccaccagggggactcaatc 30648903  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 26089571 - 26089440
Alignment:
Q  12 atgaaccaaaaaggactaataaaatcacggaattgacatatgtaggggatatcctccacatagaaaataaataactagcggtaaaccaacccattggaga 111  Q
    |||||| ||||||||  |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| ||| | |||||||||    
T  26089571 atgaactaaaaaggatgaataaaataatggaattgacatgtgtaggggatatcctccacatagaaaataaatagctaacggtaagccatctcattggaga 26089472  T
Q  112 acccactagaaagcatatttttccatatggta 143  Q
      | |||||||| | |||||||||||||||||    
T  26089471 ggctactagaaaccctatttttccatatggta 26089440  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 338
Target Start/End: Complemental strand, 26089375 - 26089245
Alignment:
Q  208 gaattcataccctgacaaaactgatttcccagcatttcctgggtgggcagaaatggtaaaattggaggaagtgatgttcgtgttagtg---tcaccagca 304  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    | |||||| ||| ||||||||||||||||||||     | ||   |||| ||||    
T  26089375 gaattcatatcctgacaaaacagatttcccagcatttcctgga---gtagaaatagtagaattggaggaagtgatgttcacaccattgccatcactagca 26089279  T
Q  305 ctaacctgataaattccaccagggggactcaatc 338  Q
    ||||||||||||||||||| ||||||||||||||    
T  26089278 ctaacctgataaattccactagggggactcaatc 26089245  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 336
Target Start/End: Complemental strand, 14727856 - 14727777
Alignment:
Q  257 gaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactcaa 336  Q
    ||||| ||| ||||||||||||||||||||   ||| ||||||||||||||| |||||||| ||||||||||||||||||    
T  14727856 gaaatagtagaattggaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaa 14727777  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 15329952 - 15329873
Alignment:
Q  256 agaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactca 335  Q
    |||||| ||| ||||||||||||||||||||   ||| ||||| ||||||||| |||||||| |||||||||||||||||    
T  15329952 agaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccaccagggggactca 15329873  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 15510321 - 15510242
Alignment:
Q  256 agaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactca 335  Q
    |||||| ||| ||||||||||||||||||||   ||| ||||| ||||||||| |||||||| |||||||||||||||||    
T  15510321 agaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccaccagggggactca 15510242  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 28866046 - 28865967
Alignment:
Q  256 agaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactca 335  Q
    |||||| ||| ||||||||||||||||||||   ||| ||||| ||| ||||| |||||||| |||||||||||||||||    
T  28866046 agaaatagtagaattggaggaagtgatgttcaaattattgtcatcagaactaatctgataaaatccaccagggggactca 28865967  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 333
Target Start/End: Complemental strand, 29552888 - 29552811
Alignment:
Q  256 agaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggact 333  Q
    |||||| ||| ||||||||||||||||||||   ||  |||||| |||| |||||||||||| |||||||||||||||    
T  29552888 agaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggact 29552811  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 28693166 - 28693225
Alignment:
Q  272 gaggaagtgatgttcgtgttagtgtcaccagcact-aacctgataaattccaccaggggg 330  Q
    |||||||||||||||   ||| ||||||||||||| || |||||||||||||||||||||    
T  28693166 gaggaagtgatgttcaaattactgtcaccagcactaaatctgataaattccaccaggggg 28693225  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 6610910 - 6610952
Alignment:
Q  296 tcaccagcactaacctgataaattccaccagggggactcaatc 338  Q
    |||||| ||||||||||||||||||||||||| ||||||||||    
T  6610910 tcaccaacactaacctgataaattccaccaggaggactcaatc 6610952  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 6610681 - 6610730
Alignment:
Q  76 aaataaataactagcggtaaaccaacccattggagaacccactagaaagc 125  Q
    |||||||| ||||||| | |||||||||| ||||||| ||||||||||||    
T  6610681 aaataaatgactagcgctgaaccaacccactggagaagccactagaaagc 6610730  T

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