View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_36 (Length: 352)
Name: NF17897_low_36
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 34679030 - 34678700
Alignment:
| Q |
17 |
tttcaatctcccgcaattgtgaaattttgatttcatgtgtttcaattgtgtggatgatgtctcctagatatcacaattgttaatatcatctttctctcca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34679030 |
tttcaatctcccgcaattgtgaaattttgatttcatgtgtttcaattgtgtggatgatgtctcctagatatcacaattgttaatatcatctttctctcca |
34678931 |
T |
|
| Q |
117 |
tccattaatcatattgaagtacttgttcaaaaattaatcatattggagtaattgttaatgctaaaagccaaaatcgtcg----ttgaatgaagaataaat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34678930 |
tccattaatcatattgaagtacttgttcaaaaattaatcatattggagtaattgttaatgctaaaagccaaaatcgtcgttaattgaatgaagaataaat |
34678831 |
T |
|
| Q |
213 |
aaaagaaggaaaaaatttaatcgatatttaattacactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctg |
312 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
34678830 |
aaaagaaggaaaaaattt-atcgatatttaattacactcaccattccaaaaacttttccagcatggacttgaagtttaggactatcttgtactccagctg |
34678732 |
T |
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| Q |
313 |
agtccttaagaaaagagaacattccctttgct |
344 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |
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| T |
34678731 |
agtccttaagaaaagagaacataccctttgct |
34678700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 243 - 344
Target Start/End: Complemental strand, 18270907 - 18270806
Alignment:
| Q |
243 |
attacactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaagaaaagagaacattccctttg |
342 |
Q |
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|||| |||||||||||||||||||||| |||| || |||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |
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| T |
18270907 |
attaaactcaccattccaaaaactttttcagcgtgggcttggagtttaggactatcttgtactccagctgaatccttaagaaaagagaacatgccctttg |
18270808 |
T |
|
| Q |
343 |
ct |
344 |
Q |
| |
|
|| |
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| T |
18270807 |
ct |
18270806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 243 - 344
Target Start/End: Complemental strand, 34685950 - 34685849
Alignment:
| Q |
243 |
attacactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaagaaaagagaacattccctttg |
342 |
Q |
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||||||||||||||||||||||||||| |||| || |||| |||| ||||||||||||||| | | |||||||||||||||||||||||| ||||||| |
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| T |
34685950 |
attacactcaccattccaaaaactttttcagcgtgagcttggagttggggactatcttgtactcccgttgagtccttaagaaaagagaacataccctttg |
34685851 |
T |
|
| Q |
343 |
ct |
344 |
Q |
| |
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|| |
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| T |
34685850 |
ct |
34685849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 333
Target Start/End: Original strand, 27842396 - 27842486
Alignment:
| Q |
243 |
attacactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaagaaaagagaaca |
333 |
Q |
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|||| ||| |||| ||||||||||||| |||| || |||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27842396 |
attatacttaccagtccaaaaactttttcagcgtgagcttggagttgaggactatcttgtactccagctgagtccttaagaaaagagaaca |
27842486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 344
Target Start/End: Original strand, 34430466 - 34430558
Alignment:
| Q |
252 |
accattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaagaaaagagaacattccctttgct |
344 |
Q |
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|||||| ||||||||||| ||||||| ||||||||| |||||||||||||||| ||| || || ||||||||||||||||| || |||||| |
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| T |
34430466 |
accatttcaaaaacttttgcagcatgagcttgaagttgaggactatcttgtactccagttgtatctttaagaaaagagaacatgccttttgct |
34430558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 344
Target Start/End: Original strand, 34422189 - 34422286
Alignment:
| Q |
247 |
cactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaagaaaagagaacattccctttgct |
344 |
Q |
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|
||||||||||| ||| || ||| ||||||| ||||||||| ||||||||||| ||| ||| | || |||||||||||||||||| ||||||||| |
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| T |
34422189 |
cactcaccatttgaaacaccttttcagcatgggcttgaagttgaggactatcttttacctcaggcgtgttcttaagaaaagagaacatgccctttgct |
34422286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 330
Target Start/End: Complemental strand, 34649352 - 34649245
Alignment:
| Q |
223 |
aaaaatttaatcgatatttaattacactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaag |
322 |
Q |
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||||| ||||| ||| |||||| ||| ||||||| ||||||||| | ||||||| |||| |||| ||||||||||||||| ||| ||| |||| || |
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| T |
34649352 |
aaaaagttaattgatgcttaattccacgcaccatttcaaaaacttgttcagcatgagcttggagttcgggactatcttgtactccagtcgagcccttcag |
34649253 |
T |
|
| Q |
323 |
aaaagaga |
330 |
Q |
| |
|
|||||||| |
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| T |
34649252 |
aaaagaga |
34649245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 34650131 - 34650057
Alignment:
| Q |
33 |
ttgtgaaattttgatttcatgtgtttcaattgtgtggatgatgtctcctagata--tcacaattgttaatatcat |
105 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| ||| | |||| ||||||| ||||||||||||| ||||| |
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| T |
34650131 |
ttgtgaaattttgattcgatgtgttacaattgtgttgattaggtcttctagatatctcacaattgttaacatcat |
34650057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 2068120 - 2068224
Alignment:
| Q |
240 |
ttaattacactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaagaaaagagaacattccct |
339 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| |
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| T |
2068120 |
ttaattacactcaccattccaaaaactttttcagcatgactttggagtttaggactatcttgtactccagctgtgtccttaagaaaagagaacatgccct |
2068219 |
T |
|
| Q |
340 |
ttgct |
344 |
Q |
| |
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||||| |
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|
| T |
2068220 |
ttgct |
2068224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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