View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17897_low_39 (Length: 336)
Name: NF17897_low_39
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 335
Target Start/End: Complemental strand, 29685900 - 29685565
Alignment:
| Q |
5 |
gaggaggagcagagagtagtgacggttacctggttgttggttcgtaaatagtaagacaaaggtatattggcgtagtcaaaggaaaggaaaggattgtgtt |
104 |
Q |
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| T |
29685900 |
gaggatgagcaaagagtagtgacggttacctggttgttggttcgtaaatagtaagacaaaggtatattggcgtagtcaaaggaaaggaaaggattgtgtt |
29685801 |
T |
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| Q |
105 |
atctcactactacctagtgtgaacacataccctaattagtgttagnnnnnnnnnccacacagattaagaaatcacaatttgtacccnnnnnnntctcata |
204 |
Q |
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| T |
29685800 |
atctcactactacctattgtgaacacataccctaattagtgttagtttttttttccacacagattaagaaatcacaatttgtacccaaaaaaatctcata |
29685701 |
T |
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| Q |
205 |
gttttagttttttaaccataatcaataaatgaattttgctgttaa-----nnnnnnnnnattttgcaattggagtgaagaggctgatcagtggagactga |
299 |
Q |
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| T |
29685700 |
gttttagttttttaaccataatcaataaatgaattttgctgttaattttttttttttttattttgcaattggagtgaagaggctgatcagtggagaccgg |
29685601 |
T |
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| Q |
300 |
agagtagtgaagtgagagaaaccagtagaagaagag |
335 |
Q |
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| T |
29685600 |
agagtagtgaagtgagagaaatcagtagaagaagag |
29685565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 82 - 316
Target Start/End: Complemental strand, 29680376 - 29680145
Alignment:
| Q |
82 |
aaaggaaaggaaaggattgtgttatctcactactacctagtgtgaacacataccctaattagtgttagnnnnnnnnnccacacagattaagaaatcacaa |
181 |
Q |
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| T |
29680376 |
aaaggaaaggaaaggattgtgttatctcactactacctagtgtgaacacataccctaattgttagtttttttttgtcacacacagattaagaaatcacaa |
29680277 |
T |
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| Q |
182 |
tttgtacccnnnnnnntctcatagttttag-ttttttaaccataatcaataaatgaattttgctgttaannnnnnnnnattttgcaattggagtgaagag |
280 |
Q |
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| T |
29680276 |
tttgtacccaacaaaatctcataattttagtttttttaaccataatcaataaatgaattttgatgttaa-atttttttattttgcatttggagtgaagag |
29680178 |
T |
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| Q |
281 |
gctgatcagtggagactgaagagtagtgaagtgaga |
316 |
Q |
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| T |
29680177 |
actg---agtggagactggagagtagtgaagtgaga |
29680145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 29668482 - 29668370
Alignment:
| Q |
40 |
gttggttcgtaaatagtaagacaaaggtatattggcgtagtcaaaggaaaggaaaggattgtgttatct--------cactactacctagtgtgaacaca |
131 |
Q |
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| T |
29668482 |
gttggtccgtaaataggaagacaaaggtatattggtatagtcaaaggaaaggaaaggatcgtgttatcttatctccctactactatctagtgtgaacaca |
29668383 |
T |
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| Q |
132 |
taccctaattagt |
144 |
Q |
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| T |
29668382 |
tgccctaattagt |
29668370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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