View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17897_low_42 (Length: 329)
Name: NF17897_low_42
Description: NF17897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17897_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 38706210 - 38706510
Alignment:
| Q |
8 |
ccaagaatataaacaaaagagtcaaccagtcaaaccccaaactataagcttagttccatcttaatcctaaagtagtaatattaattaaatttactcaaac |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38706210 |
ccaaaaatataaacaaaagagtcaaccagtcaaaccccaaactataagcttggttccatcttaatcctaaagtagtaatattaattaaatttactcaaac |
38706309 |
T |
|
| Q |
108 |
tggtgcattattcgtgtaccaagtcgtcactattccgtacccttttaatttatattttgtagactagtgcaaaccttgaagtatacctattcttatccga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38706310 |
tggtgcattattcgtgtaccaagtcgtcactattccgtacccttttaatttatattttgtagactagtgcaaaccttgaagtatacctatccttatccga |
38706409 |
T |
|
| Q |
208 |
ctctattatnnnnnnnnnnnncacaataactccacatgcccccaataagtgaaaccatcaattaacaatcaaaatcttacacgtttcttcgtttctcata |
307 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38706410 |
ctctattat----tatatatacacaataactccacatgcccccaataagtgaaaccatcaatta--aatcaaaatcttacacgtttcttcgtttctcata |
38706503 |
T |
|
| Q |
308 |
tatattt |
314 |
Q |
| |
|
||||||| |
|
|
| T |
38706504 |
tatattt |
38706510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University